WormBase Tree Display for Variation: WBVar02122995

WBVar02122995 Name: Public_name: WBVar02122995
    Other_name: cewivar00853918
    HGVSg: CHROMOSOME_I:g.6157999_6167998del
  Sequence_details: SMap: S_parent: Sequence: T09B4
    Flanking_sequences: AATATAGGTTAGATTCGGTTATGGAAAAAC TTTTAAAACAAAGAAGAAATGACTGAATTT
    Mapping_target: T09B4
    Source_location: 225 CHROMOSOME_I 6158001 6168000 From_analysis: Million_mutation_project_reanalysis
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00023286 From_analysis: Million_mutation_project_reanalysis
    Laboratory: VC
    Analysis: Million_mutation_project_reanalysis
    Status: Live
  Affects: Gene: WBGene00003328
      WBGene00023136
      WBGene00020380
      WBGene00020381
      WBGene00020378
      WBGene00020382
      WBGene00201901
      WBGene00023135
    Transcript: T09B4.19 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T09B4.4.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-53
        Exon_number: 1/6
      T09B4.8.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-7/8
        Exon_number: 1-9/9
      T09B4.6.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-4/5
        Exon_number: 1-4/6
      T09B4.t1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T09B4.t2 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T09B4.12
    Pseudogene: T09B4.7 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-6/6
        Exon_number: 1-7/7
  Remark: The boundaries of this variant have been identified only approximately
    This allele is a copy number variation determined from whole-genome sequence data, and should be assumed to be non-homozygous
  Method: WGS_Flibotte