WormBase Tree Display for Variation: WBVar02084145
expand all nodes | collapse all nodes | view schema
WBVar02084145 | Name | Public_name | WBVar02084145 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00813814 | |||||||
F56D12.1a.1:c.1503_1509delinsTGGAAAT | ||||||||
F56D12.1d.1:c.1083_1089delinsTGGAAAT | ||||||||
F56D12.1b.1:c.*532_*538delinsTGGAAAT | ||||||||
F56D12.1a.2:c.1503_1509delinsTGGAAAT | ||||||||
CE29047:p.ValGlyAsnMet501= | ||||||||
CE40074:p.ValGlyAsnMet361= | ||||||||
HGVSg | CHROMOSOME_II:g.1306568_1306574delinsATTTCCA | |||||||
Sequence_details | SMap | S_parent | Sequence | F56D12 | ||||
Flanking_sequences | TGATCCAGTTGATTTGTCGTTGAGGTACAT | ACGGCGTCGCGGAGAACATCGCGAGCTCTG | ||||||
Mapping_target | F56D12 | |||||||
Source_location | 225 | CHROMOSOME_II | 1306575 | 1306581 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Insertion | ATTTCCA | ||||||
Deletion | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00000112 | ||||||
Transcript | F56D12.1b.1 | VEP_consequence | 3_prime_UTR_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | F56D12.1b.1:c.*532_*538delinsTGGAAAT | |||||||
cDNA_position | 2073-2080 | |||||||
Exon_number | 8/8 | |||||||
F56D12.1a.2 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | F56D12.1a.2:c.1503_1509delinsTGGAAAT | |||||||
HGVSp | CE29047:p.ValGlyAsnMet501= | |||||||
cDNA_position | 1602-1609 | |||||||
CDS_position | 1503-1510 | |||||||
Protein_position | 501-504 | |||||||
Exon_number | 9/10 | |||||||
Codon_change | gtCGGCAACAtg/gtTGGAAATAtg | |||||||
Amino_acid_change | VGNM | |||||||
F56D12.1a.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | F56D12.1a.1:c.1503_1509delinsTGGAAAT | |||||||
HGVSp | CE29047:p.ValGlyAsnMet501= | |||||||
cDNA_position | 1506-1513 | |||||||
CDS_position | 1503-1510 | |||||||
Protein_position | 501-504 | |||||||
Exon_number | 8/9 | |||||||
Codon_change | gtCGGCAACAtg/gtTGGAAATAtg | |||||||
Amino_acid_change | VGNM | |||||||
F56D12.1d.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | F56D12.1d.1:c.1083_1089delinsTGGAAAT | |||||||
HGVSp | CE40074:p.ValGlyAsnMet361= | |||||||
cDNA_position | 1083-1090 | |||||||
CDS_position | 1083-1090 | |||||||
Protein_position | 361-364 | |||||||
Exon_number | 4/4 | |||||||
Codon_change | gtCGGCAACAtg/gtTGGAAATAtg | |||||||
Amino_acid_change | VGNM | |||||||
Method | WGS_Flibotte |