WormBase Tree Display for Variation: WBVar02074825
expand all nodes | collapse all nodes | view schema
WBVar02074825 | Name | Public_name | WBVar02074825 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00804138 | |||||||
CE46875:p.Val67GlufsTer25 | ||||||||
C42C1.7a.1:c.200_315del | ||||||||
HGVSg | CHROMOSOME_IV:g.12300734_12300849del | |||||||
Sequence_details | SMap | S_parent | Sequence | C42C1 | ||||
Flanking_sequences | AAATAATGCTCGAAGAGCTGACGATTGATT | CTGATATTAACGACATGCTCTCGGTTTTGG | ||||||
Mapping_target | C42C1 | |||||||
Source_location | 225 | CHROMOSOME_IV | 12300712 | 12300827 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00016585 | ||||||
Transcript | C42C1.7a.1 | VEP_consequence | frameshift_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | C42C1.7a.1:c.200_315del | |||||||
HGVSp | CE46875:p.Val67GlufsTer25 | |||||||
cDNA_position | 204-319 | |||||||
CDS_position | 200-315 | |||||||
Protein_position | 67-105 | |||||||
Exon_number | 3/13 | |||||||
Codon_change | gTGCTCACTCATTTCTACACTCGACGCTTCAAACGAATTCTTCCATTATATTTCCTCATAATTCTCATTTCTGTAGTTGCACTCTACACCGTCTTCACATCAACTGCAATTGTACAG/g | |||||||
Amino_acid_change | VLTHFYTRRFKRILPLYFLIILISVVALYTVFTSTAIVQ/X | |||||||
Method | WGS_Flibotte |