WormBase Tree Display for Variation: WBVar02042242
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WBVar02042242 | Name | Public_name | WBVar02042242 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00771352 | |||||||
C48D1.5f.1:c.466-1754del | ||||||||
C48D1.5d.1:c.598-1754del | ||||||||
JC8.17:n.416del | ||||||||
C48D1.5c.1:c.676-1754del | ||||||||
C48D1.5e.1:c.544-1754del | ||||||||
HGVSg | CHROMOSOME_IV:g.13231035del | |||||||
Sequence_details | SMap | S_parent | Sequence | JC8 | ||||
Flanking_sequences | AACATTTTCAGTAAAAATCTATAAATATTT | AAAAAAAAAGGATTTTTCGGTTAAAAAACA | ||||||
Mapping_target | JC8 | |||||||
Source_location | 225 | CHROMOSOME_IV | 13231011 | 13231011 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00219548 | ||||||
WBGene00008178 | ||||||||
Transcript | JC8.17 | VEP_consequence | non_coding_transcript_exon_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | JC8.17:n.416del | |||||||
cDNA_position | 416 | |||||||
Exon_number | 1/1 | |||||||
C48D1.5e.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | C48D1.5e.1:c.544-1754del | |||||||
Intron_number | 4/4 | |||||||
C48D1.5c.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | C48D1.5c.1:c.676-1754del | |||||||
Intron_number | 6/6 | |||||||
C48D1.5f.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | C48D1.5f.1:c.466-1754del | |||||||
Intron_number | 3/3 | |||||||
C48D1.5d.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | C48D1.5d.1:c.598-1754del | |||||||
Intron_number | 5/6 | |||||||
Method | WGS_Flibotte |