WormBase Tree Display for Variation: WBVar01762692
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WBVar01762692 | Name | Public_name | WBVar01762692 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00462614 | |||||||
F56D12.1a.1:c.1542C>T | ||||||||
F56D12.1a.2:c.1542C>T | ||||||||
F56D12.1b.1:c.*571C>T | ||||||||
CE40074:p.Ile374= | ||||||||
F56D12.1d.1:c.1122C>T | ||||||||
CE29047:p.Ile514= | ||||||||
HGVSg | CHROMOSOME_II:g.1306535G>A | |||||||
Sequence_details | SMap | S_parent | Sequence | F56D12 | ||||
Flanking_sequences | TCTGGAGCCTCCGAATGGCTGCTGGCCGAC | ATTGATCCAGTTGATTTGTCGTTGAGGTAC | ||||||
Mapping_target | F56D12 | |||||||
Source_location | 225 | CHROMOSOME_II | 1306542 | 1306542 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | G | A | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00000112 | ||||||
Transcript | F56D12.1b.1 | VEP_consequence | 3_prime_UTR_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | F56D12.1b.1:c.*571C>T | |||||||
cDNA_position | 2112 | |||||||
Exon_number | 8/8 | |||||||
F56D12.1a.2 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | F56D12.1a.2:c.1542C>T | |||||||
HGVSp | CE29047:p.Ile514= | |||||||
cDNA_position | 1641 | |||||||
CDS_position | 1542 | |||||||
Protein_position | 514 | |||||||
Exon_number | 9/10 | |||||||
Codon_change | atC/atT | |||||||
Amino_acid_change | I | |||||||
F56D12.1a.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | F56D12.1a.1:c.1542C>T | |||||||
HGVSp | CE29047:p.Ile514= | |||||||
cDNA_position | 1545 | |||||||
CDS_position | 1542 | |||||||
Protein_position | 514 | |||||||
Exon_number | 8/9 | |||||||
Codon_change | atC/atT | |||||||
Amino_acid_change | I | |||||||
F56D12.1d.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | F56D12.1d.1:c.1122C>T | |||||||
HGVSp | CE40074:p.Ile374= | |||||||
cDNA_position | 1122 | |||||||
CDS_position | 1122 | |||||||
Protein_position | 374 | |||||||
Exon_number | 4/4 | |||||||
Codon_change | atC/atT | |||||||
Amino_acid_change | I | |||||||
Method | WGS_Flibotte |