WormBase Tree Display for Variation: WBVar01687329
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| WBVar01687329 | Name | Public_name | WBVar01687329 | |||||
|---|---|---|---|---|---|---|---|---|
| Other_name | cewivar00379207 | |||||||
| CE27820:p.Asp29Tyr | ||||||||
| C34H4.3a.1:c.85G>T | ||||||||
| C34H4.3b.1:c.85G>T | ||||||||
| C34H4.3c.1:c.85G>T | ||||||||
| CE49049:p.Asp29Tyr | ||||||||
| CE48885:p.Asp29Tyr | ||||||||
| HGVSg | CHROMOSOME_IV:g.1551031G>T | |||||||
| Sequence_details | SMap | S_parent | Sequence | C34H4 | ||||
| Flanking_sequences | GATCCGAGAATTATCTGGTTGTACAACTAC | ATAGTGGATCTACTCAAAATATAGTACCAG | ||||||
| Mapping_target | C34H4 | |||||||
| Source_location | 225 | CHROMOSOME_IV | 1551030 | 1551030 | From_analysis | Million_mutation_project_reanalysis | ||
| Type_of_mutation | Substitution | G | T | |||||
| SeqStatus | Sequenced | |||||||
| Variation_type | Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | ||||||
| Strain | WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | ||||||
| Laboratory | VC | |||||||
| Analysis | Million_mutation_project_reanalysis | |||||||
| Status | Live | |||||||
| Affects | Gene | WBGene00044073 | ||||||
| Transcript | C34H4.3c.1 | VEP_consequence | missense_variant | |||||
| VEP_impact | MODERATE | |||||||
| SIFT | 0.05 | deleterious | ||||||
| PolyPhen | 0.503 | possibly_damaging | ||||||
| HGVSc | C34H4.3c.1:c.85G>T | |||||||
| HGVSp | CE48885:p.Asp29Tyr | |||||||
| cDNA_position | 85 | |||||||
| CDS_position | 85 | |||||||
| Protein_position | 29 | |||||||
| Exon_number | 1/5 | |||||||
| Codon_change | Gat/Tat | |||||||
| Amino_acid_change | D/Y | |||||||
| C34H4.3b.1 | VEP_consequence | missense_variant | ||||||
| VEP_impact | MODERATE | |||||||
| SIFT | 0.23 | tolerated | ||||||
| PolyPhen | 0.503 | possibly_damaging | ||||||
| HGVSc | C34H4.3b.1:c.85G>T | |||||||
| HGVSp | CE49049:p.Asp29Tyr | |||||||
| cDNA_position | 85 | |||||||
| CDS_position | 85 | |||||||
| Protein_position | 29 | |||||||
| Exon_number | 1/5 | |||||||
| Codon_change | Gat/Tat | |||||||
| Amino_acid_change | D/Y | |||||||
| C34H4.3a.1 | VEP_consequence | missense_variant | ||||||
| VEP_impact | MODERATE | |||||||
| SIFT | 0.09 | tolerated | ||||||
| PolyPhen | 0.503 | possibly_damaging | ||||||
| HGVSc | C34H4.3a.1:c.85G>T | |||||||
| HGVSp | CE27820:p.Asp29Tyr | |||||||
| cDNA_position | 154 | |||||||
| CDS_position | 85 | |||||||
| Protein_position | 29 | |||||||
| Exon_number | 2/10 | |||||||
| Codon_change | Gat/Tat | |||||||
| Amino_acid_change | D/Y | |||||||
| Method | WGS_Flibotte |
