WormBase Tree Display for Variation: WBVar01621878
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WBVar01621878 | Name | Public_name | WBVar01621878 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00301653 | |||||||
F22E10.3.1:c.3810C>T | ||||||||
CE03262:p.Ala1270= | ||||||||
F16H9.2b.1:c.35-37878C>T | ||||||||
F16H9.2a.1:c.-23-37878C>T | ||||||||
HGVSg | CHROMOSOME_X:g.12745181G>A | |||||||
Sequence_details | SMap | S_parent | Sequence | F22E10 | ||||
Flanking_sequences | GGCAATTGTGATACACGTACGACCTTCTCG | GCACGATCTAATGCCTCTTGTACAGCCTGA | ||||||
Mapping_target | F22E10 | |||||||
Source_location | 225 | CHROMOSOME_X | 12745111 | 12745111 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | G | A | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00004008 | ||||||
WBGene00008901 | ||||||||
Transcript | F16H9.2b.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | F16H9.2b.1:c.35-37878C>T | |||||||
Intron_number | 1/3 | |||||||
F16H9.2a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F16H9.2a.1:c.-23-37878C>T | |||||||
Intron_number | 1/4 | |||||||
F22E10.3.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | F22E10.3.1:c.3810C>T | |||||||
HGVSp | CE03262:p.Ala1270= | |||||||
cDNA_position | 3835 | |||||||
CDS_position | 3810 | |||||||
Protein_position | 1270 | |||||||
Exon_number | 9/10 | |||||||
Codon_change | gcC/gcT | |||||||
Amino_acid_change | A | |||||||
Method | WGS_Flibotte |