WormBase Tree Display for Variation: WBVar01601698
expand all nodes | collapse all nodes | view schema
WBVar01601698 | Name | Public_name | WBVar01601698 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00273325 | |||||||
F39C12.3a.1:c.-155T>A | ||||||||
F39C12.3b.1:c.-83T>A | ||||||||
F39C12.3a.3:c.-38+2327T>A | ||||||||
HGVSg | CHROMOSOME_X:g.4874490A>T | |||||||
Sequence_details | SMap | S_parent | Sequence | F39C12 | ||||
Flanking_sequences | CCTAGCTTCAGGAAGTCGTTTAAAAAAGGA | TATGGGCTTGGTGGGGAAATTGAAAGAACA | ||||||
Mapping_target | F39C12 | |||||||
Source_location | 225 | CHROMOSOME_X | 4874460 | 4874460 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | A | T | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00006640 | ||||||
Transcript | F39C12.3a.3 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | |||||||
HGVSc | F39C12.3a.3:c.-38+2327T>A | |||||||
Intron_number | 1/10 | |||||||
F39C12.3a.1 | VEP_consequence | 5_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F39C12.3a.1:c.-155T>A | |||||||
cDNA_position | 4 | |||||||
Exon_number | 1/11 | |||||||
F39C12.3b.1 | VEP_consequence | 5_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | F39C12.3b.1:c.-83T>A | |||||||
cDNA_position | 4 | |||||||
Exon_number | 1/10 | |||||||
Method | WGS_Flibotte |