WormBase Tree Display for Variation: WBVar01474051

WBVar01474051 Name: Public_name: tm6151
    HGVSg: CHROMOSOME_I:g.8218059_8218603del
  Sequence_details: SMap: S_parent: Sequence: T02E1
    Flanking_sequences: cttccaattctttgagtgtttctttgtttc agaattttgaagtttttgattcatagtttt
    Mapping_target: T02E1
    Source_location: 7 CHROMOSOME_I 8218058 8218604 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm6151_external
      tm6151_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6151
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000967
    Transcript: T02E1.5b.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-229
        CDS_position: ?-229
        Protein_position: ?-77
        Exon_number: 1/7
      T02E1.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-223
        CDS_position: ?-223
        Protein_position: ?-75
        Intron_number: 1/7
        Exon_number: 1-2/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0001171 Paper_evidence: WBPaper00059839
        Curator_confirmed: WBPerson42723
        Remark: shortened lifespan upon exposure to S. maltophilia K279a, JCMS, and JV3 Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Variation_effect: Null: Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Phenotype_assay: Control_strain: WBStrain00000001 Paper_evidence: WBPaper00059839
              Curator_confirmed: WBPerson42723
      WBPhenotype:0001183 Paper_evidence: WBPaper00054299
        Curator_confirmed: WBPerson11083
        Remark: Decreased TAG level (Figure 5) Paper_evidence: WBPaper00054299
            Curator_confirmed: WBPerson11083
      WBPhenotype:0002279 Paper_evidence: WBPaper00054299
        Curator_confirmed: WBPerson11083
        Remark: Decreased lipid droplet size (Figure 5) Paper_evidence: WBPaper00054299
            Curator_confirmed: WBPerson11083
    Phenotype_not_observed: WBPhenotype:0000039 Paper_evidence: WBPaper00059839
        Curator_confirmed: WBPerson42723
        Remark: NO lifespan phenotype upon exposure to E. coli OP50 Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Variation_effect: Null: Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Phenotype_assay: Control_strain: WBStrain00000001 Paper_evidence: WBPaper00059839
              Curator_confirmed: WBPerson42723
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Reference: WBPaper00054299
    WBPaper00059839
  Remark: 14390/14391-14935/14936 (545 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele