WormBase Tree Display for Variation: WBVar01472907
expand all nodes | collapse all nodes | view schema
WBVar01472907 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01472907 | ||||
Other_name | F39D8.3b.1:c.880+280G>T | |||||
F39D8.3a.1:c.757+280G>T | ||||||
F39D8.3a.2:c.757+280G>T | ||||||
HGVSg | CHROMOSOME_X:g.15423769G>T | |||||
Sequence_details | SMap | S_parent | Sequence | F39D8 | ||
Flanking_sequences | GAATTCGCGCTGTTTCTAAGGCTGCTAAAG | GCTACAAGGGGCTCAGCTCCAGCCCCGCTC | ||||
Mapping_target | F39D8 | |||||
Type_of_mutation | Substitution | g | t | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00006690 | From_analysis | WGS_Andersen | |||
WBStrain00006691 | From_analysis | WGS_Andersen | ||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | WGS_Andersen | |||||
DB_info | Database | dbSNP_rs | rs | 193358209 | ||
dbSNP_ss | ss | 295534128 | ||||
Status | Live | |||||
Affects | Gene | WBGene00009561 | ||||
Transcript | F39D8.3a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | F39D8.3a.2:c.757+280G>T | |||||
Intron_number | 6/9 | |||||
F39D8.3a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F39D8.3a.1:c.757+280G>T | |||||
Intron_number | 7/10 | |||||
F39D8.3b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F39D8.3b.1:c.880+280G>T | |||||
Intron_number | 6/8 | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |