WormBase Tree Display for Variation: WBVar01471668
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WBVar01471668 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01471668 | ||||
Other_name | H20J18.1f.2:c.-3+1557A>G | |||||
H20J18.1h.1:c.-3+1557A>G | ||||||
H20J18.1a.1:c.-3+1557A>G | ||||||
H20J18.1c.1:c.400+1557A>G | ||||||
H20J18.1f.1:c.-3+1557A>G | ||||||
H20J18.1a.3:c.-3+1557A>G | ||||||
HGVSg | CHROMOSOME_X:g.12512396T>C | |||||
Sequence_details | SMap | S_parent | Sequence | H20J18 | ||
Flanking_sequences | TACCAGTATTTTTCTTTTCAAGAAAAACAA | ACAACAAGATAGAAAAAAAACTCGAATTCA | ||||
Mapping_target | H20J18 | |||||
Type_of_mutation | Substitution | t | c | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00006698 | From_analysis | WGS_Andersen | |||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | WGS_Andersen | |||||
DB_info | Database | dbSNP_rs | rs | 193356970 | ||
dbSNP_ss | ss | 295532889 | ||||
Status | Live | |||||
Affects | Gene | WBGene00004739 | ||||
Transcript | H20J18.1f.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | H20J18.1f.2:c.-3+1557A>G | |||||
Intron_number | 1/13 | |||||
H20J18.1a.3 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | H20J18.1a.3:c.-3+1557A>G | |||||
Intron_number | 2/14 | |||||
H20J18.1h.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | H20J18.1h.1:c.-3+1557A>G | |||||
Intron_number | 1/12 | |||||
H20J18.1a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | H20J18.1a.1:c.-3+1557A>G | |||||
Intron_number | 1/13 | |||||
H20J18.1f.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | H20J18.1f.1:c.-3+1557A>G | |||||
Intron_number | 2/14 | |||||
H20J18.1c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | H20J18.1c.1:c.400+1557A>G | |||||
Intron_number | 2/12 | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |