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WormBase Tree Display for Variation: WBVar01471668

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Name Class

WBVar01471668EvidencePaper_evidenceWBPaper00040707
NamePublic_nameWBVar01471668
Other_nameH20J18.1f.2:c.-3+1557A>G
H20J18.1h.1:c.-3+1557A>G
H20J18.1a.1:c.-3+1557A>G
H20J18.1c.1:c.400+1557A>G
H20J18.1f.1:c.-3+1557A>G
H20J18.1a.3:c.-3+1557A>G
HGVSgCHROMOSOME_X:g.12512396T>C
Sequence_detailsSMapS_parentSequenceH20J18
Flanking_sequencesTACCAGTATTTTTCTTTTCAAGAAAAACAAACAACAAGATAGAAAAAAAACTCGAATTCA
Mapping_targetH20J18
Type_of_mutationSubstitutiontc
SeqStatusSequenced
Variation_typeSNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00006698From_analysisWGS_Andersen
LaboratoryQX
PersonWBPerson1730
AnalysisWGS_Andersen
DB_infoDatabasedbSNP_rsrs193356970
dbSNP_ssss295532889
StatusLive
AffectsGeneWBGene00004739
TranscriptH20J18.1f.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScH20J18.1f.2:c.-3+1557A>G
Intron_number1/13
H20J18.1a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScH20J18.1a.3:c.-3+1557A>G
Intron_number2/14
H20J18.1h.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScH20J18.1h.1:c.-3+1557A>G
Intron_number1/12
H20J18.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScH20J18.1a.1:c.-3+1557A>G
Intron_number1/13
H20J18.1f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScH20J18.1f.1:c.-3+1557A>G
Intron_number2/14
H20J18.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScH20J18.1c.1:c.400+1557A>G
Intron_number2/12
ReferenceWBPaper00040707
MethodWGS_Andersen