WormBase Tree Display for Variation: WBVar01442024
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WBVar01442024 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01442024 | ||||
Other_name | F01D5.3.1:c.365G>T | |||||
CE18561:p.Arg122Leu | ||||||
HGVSg | CHROMOSOME_II:g.13999240C>A | |||||
Sequence_details | SMap | S_parent | Sequence | F01D5 | ||
Flanking_sequences | TTGATGAAAATATTATTAGCAAATTTCTCC | GTTGCTGGCAATTTATGCAGGCTCCCGGGT | ||||
Mapping_target | F01D5 | |||||
Type_of_mutation | Substitution | c | a | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00005835 | From_analysis | WGS_Andersen | |||
WBStrain00023139 | From_analysis | WGS_Andersen | ||||
Million_mutation_project_reanalysis | ||||||
WBStrain00027648 | From_analysis | WGS_Andersen | ||||
Million_mutation_project_reanalysis | ||||||
WBStrain00027660 | From_analysis | WGS_Andersen | ||||
Million_mutation_project_reanalysis | ||||||
WBStrain00027661 | From_analysis | WGS_Andersen | ||||
WBStrain00027669 | From_analysis | WGS_Andersen | ||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | WGS_Andersen | |||||
DB_info | Database | dbSNP_rs | rs | 193329409 | ||
dbSNP_ss | ss | 295505328 | ||||
Status | Live | |||||
Affects | Gene | WBGene00008494 | ||||
Transcript | F01D5.3.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
SIFT | 0.9 | tolerated | ||||
PolyPhen | 0.001 | benign | ||||
HGVSc | F01D5.3.1:c.365G>T | |||||
HGVSp | CE18561:p.Arg122Leu | |||||
cDNA_position | 480 | |||||
CDS_position | 365 | |||||
Protein_position | 122 | |||||
Exon_number | 3/4 | |||||
Codon_change | cGg/cTg | |||||
Amino_acid_change | R/L | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |