WormBase Tree Display for Variation: WBVar01440330
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WBVar01440330 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01440330 | ||||
Other_name | Y17G7B.20a.2:c.*116G>A | |||||
Y17G7B.20c.1:c.*116G>A | ||||||
Y17G7B.20a.3:c.*99+17G>A | ||||||
Y17G7B.20a.1:c.*116G>A | ||||||
Y17G7B.20c.3:c.*116G>A | ||||||
Y17G7B.20c.2:c.*50+66G>A | ||||||
HGVSg | CHROMOSOME_II:g.11978318C>T | |||||
Sequence_details | SMap | S_parent | Sequence | Y17G7B | ||
Flanking_sequences | GAAAAATTGATTAAATGATTAATTTTCTCT | GGCTCAAAAACCCAACTCCTGCAAATAAGT | ||||
Mapping_target | Y17G7B | |||||
Type_of_mutation | Substitution | c | t | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain (19) | ||||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | WGS_Andersen | |||||
DB_info | Database | dbSNP_rs | rs | 193328204 | ||
dbSNP_ss | ss | 295504123 | ||||
Status | Live | |||||
Affects | Gene | WBGene00012471 | ||||
Transcript | Y17G7B.20c.3 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | Y17G7B.20c.3:c.*116G>A | |||||
cDNA_position | 1044 | |||||
Exon_number | 5/6 | |||||
Y17G7B.20a.3 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y17G7B.20a.3:c.*99+17G>A | |||||
Intron_number | 3/3 | |||||
Y17G7B.20c.2 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y17G7B.20c.2:c.*50+66G>A | |||||
Intron_number | 5/6 | |||||
Y17G7B.20a.1 | VEP_consequence | 3_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y17G7B.20a.1:c.*116G>A | |||||
cDNA_position | 1001 | |||||
Exon_number | 3/3 | |||||
Y17G7B.20a.2 | VEP_consequence | 3_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y17G7B.20a.2:c.*116G>A | |||||
cDNA_position | 1001 | |||||
Exon_number | 3/5 | |||||
Y17G7B.20c.1 | VEP_consequence | 3_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y17G7B.20c.1:c.*116G>A | |||||
cDNA_position | 1038 | |||||
Exon_number | 5/5 | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |