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WormBase Tree Display for Variation: WBVar01440330

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Name Class

WBVar01440330EvidencePaper_evidenceWBPaper00040707
NamePublic_nameWBVar01440330
Other_nameY17G7B.20a.2:c.*116G>A
Y17G7B.20c.1:c.*116G>A
Y17G7B.20a.3:c.*99+17G>A
Y17G7B.20a.1:c.*116G>A
Y17G7B.20c.3:c.*116G>A
Y17G7B.20c.2:c.*50+66G>A
HGVSgCHROMOSOME_II:g.11978318C>T
Sequence_detailsSMapS_parentSequenceY17G7B
Flanking_sequencesGAAAAATTGATTAAATGATTAATTTTCTCTGGCTCAAAAACCCAACTCCTGCAAATAAGT
Mapping_targetY17G7B
Type_of_mutationSubstitutionct
SeqStatusSequenced
Variation_typeSNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (19)
LaboratoryQX
PersonWBPerson1730
AnalysisWGS_Andersen
DB_infoDatabasedbSNP_rsrs193328204
dbSNP_ssss295504123
StatusLive
AffectsGeneWBGene00012471
TranscriptY17G7B.20c.3VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScY17G7B.20c.3:c.*116G>A
cDNA_position1044
Exon_number5/6
Y17G7B.20a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY17G7B.20a.3:c.*99+17G>A
Intron_number3/3
Y17G7B.20c.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY17G7B.20c.2:c.*50+66G>A
Intron_number5/6
Y17G7B.20a.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScY17G7B.20a.1:c.*116G>A
cDNA_position1001
Exon_number3/3
Y17G7B.20a.2VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScY17G7B.20a.2:c.*116G>A
cDNA_position1001
Exon_number3/5
Y17G7B.20c.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScY17G7B.20c.1:c.*116G>A
cDNA_position1038
Exon_number5/5
ReferenceWBPaper00040707
MethodWGS_Andersen