WormBase Tree Display for Variation: WBVar01435889
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WBVar01435889 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01435889 | ||||
Other_name | cewivar00080083 | |||||
F56D12.1d.1:c.285G>C | ||||||
CE33403:p.Ser235= | ||||||
F56D12.1a.2:c.705G>C | ||||||
F56D12.1b.1:c.705G>C | ||||||
CE29047:p.Ser235= | ||||||
CE40074:p.Ser95= | ||||||
F56D12.1a.1:c.705G>C | ||||||
CE37118:p.Ser235= | ||||||
F56D12.1c.1:c.705G>C | ||||||
HGVSg | CHROMOSOME_II:g.1307989C>G | |||||
Sequence_details | SMap | S_parent | Sequence | F56D12 | ||
Flanking_sequences | GATTATATAATTGGAGAGCACGGCGGTGTT | GATGGCTTCCAGAGGGAGACGTTACCCTGA | ||||
Mapping_target | F56D12 | |||||
Type_of_mutation | Substitution | c | g | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain (45) | ||||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | Million_mutation_project_reanalysis | |||||
WGS_Andersen | ||||||
DB_info | Database | dbSNP_rs | rs | 193323951 | ||
dbSNP_ss | ss | 295499869 | ||||
Status | Live | |||||
Affects | Gene | WBGene00000112 | ||||
Transcript | F56D12.1b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | |||||
HGVSc | F56D12.1b.1:c.705G>C | |||||
HGVSp | CE33403:p.Ser235= | |||||
cDNA_position | 707 | |||||
CDS_position | 705 | |||||
Protein_position | 235 | |||||
Exon_number | 6/8 | |||||
Codon_change | tcG/tcC | |||||
Amino_acid_change | S | |||||
F56D12.1a.2 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | F56D12.1a.2:c.705G>C | |||||
HGVSp | CE29047:p.Ser235= | |||||
cDNA_position | 804 | |||||
CDS_position | 705 | |||||
Protein_position | 235 | |||||
Exon_number | 7/10 | |||||
Codon_change | tcG/tcC | |||||
Amino_acid_change | S | |||||
F56D12.1a.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | F56D12.1a.1:c.705G>C | |||||
HGVSp | CE29047:p.Ser235= | |||||
cDNA_position | 708 | |||||
CDS_position | 705 | |||||
Protein_position | 235 | |||||
Exon_number | 6/9 | |||||
Codon_change | tcG/tcC | |||||
Amino_acid_change | S | |||||
F56D12.1d.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | F56D12.1d.1:c.285G>C | |||||
HGVSp | CE40074:p.Ser95= | |||||
cDNA_position | 285 | |||||
CDS_position | 285 | |||||
Protein_position | 95 | |||||
Exon_number | 2/4 | |||||
Codon_change | tcG/tcC | |||||
Amino_acid_change | S | |||||
F56D12.1c.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | |||||
HGVSc | F56D12.1c.1:c.705G>C | |||||
HGVSp | CE37118:p.Ser235= | |||||
cDNA_position | 705 | |||||
CDS_position | 705 | |||||
Protein_position | 235 | |||||
Exon_number | 5/6 | |||||
Codon_change | tcG/tcC | |||||
Amino_acid_change | S | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |