WormBase Tree Display for Variation: WBVar01396731
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| WBVar01396731 | Evidence | Paper_evidence | WBPaper00037807 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01396731 | ||||
| Other_name | cewivar00738566 | |||||
| B0285.1c.1:c.1290+6del | ||||||
| B0285.1b.1:c.1290+6del | ||||||
| B0285.1a.2:c.1290+6del | ||||||
| B0285.1a.1:c.1290+6del | ||||||
| B0285.1c.2:c.1290+6del | ||||||
| B0285.1b.2:c.1290+6del | ||||||
| HGVSg | CHROMOSOME_III:g.4338026del | |||||
| Sequence_details | SMap | S_parent | Sequence | B0285 | ||
| Flanking_sequences | TTTAATAAGGATCAGATTTGTTCATTGTTCAAGCAGCTTTTGGAAGTTCG | TTTTTTTTTCAAAGAAATAATTTTCAAAAAAAAAAAACGTTTTTACTTTC | ||||
| Mapping_target | B0285 | |||||
| Type_of_mutation | Deletion | T | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00006642 | From_analysis | WGS_De_Bono | |||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | ||||
| Laboratory | AX | |||||
| Analysis | WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | ||||||
| DB_info | Database | dbSNP_ss | ss | 539115853 | ||
| Status | Live | |||||
| Affects | Gene | WBGene00007135 | ||||
| Transcript | B0285.1c.2 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | B0285.1c.2:c.1290+6del | |||||
| Intron_number | 8/14 | |||||
| B0285.1b.2 | VEP_consequence | splice_region_variant,intron_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | B0285.1b.2:c.1290+6del | |||||
| Intron_number | 8/14 | |||||
| B0285.1c.1 | VEP_consequence | splice_region_variant,intron_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | B0285.1c.1:c.1290+6del | |||||
| Intron_number | 10/16 | |||||
| B0285.1a.2 | VEP_consequence | splice_region_variant,intron_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | B0285.1a.2:c.1290+6del | |||||
| Intron_number | 8/14 | |||||
| B0285.1b.1 | VEP_consequence | splice_region_variant,intron_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | B0285.1b.1:c.1290+6del | |||||
| Intron_number | 10/16 | |||||
| B0285.1a.1 | VEP_consequence | splice_region_variant,intron_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | B0285.1a.1:c.1290+6del | |||||
| Intron_number | 10/16 | |||||
| Reference | WBPaper00037807 | |||||
| Method | WGS_De_Bono |
