WormBase Tree Display for Variation: WBVar01389877
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| WBVar01389877 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01389877 | |||||
| Other_name | cewivar00192429 | ||||||
| T12B5.6b.1:c.30G>A | |||||||
| CE51680:p.Gln10= | |||||||
| T12B5.6c.1:c.30G>A | |||||||
| CE39403:p.Gln10= | |||||||
| HGVSg | CHROMOSOME_III:g.936038C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | T12B5 | |||
| Flanking_sequences | TTAGCGATATTTAAAGGCATATTGAGAAAAGTTGGCAATACCAGATTTTT | TGATGTGTCTTCGGCGCGATATCGGTCATTTTAGAAAGTTCCTGAAAAAC | |||||
| Mapping_target | T12B5 | ||||||
| Type_of_mutation | Substitution | c | T | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_De_Bono | |||||||
| WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539065328 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00020453 | |||||
| Transcript | T12B5.6c.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | ||||||
| HGVSc | T12B5.6c.1:c.30G>A | ||||||
| HGVSp | CE51680:p.Gln10= | ||||||
| cDNA_position | 48 | ||||||
| CDS_position | 30 | ||||||
| Protein_position | 10 | ||||||
| Exon_number | 2/5 | ||||||
| Codon_change | caG/caA | ||||||
| Amino_acid_change | Q | ||||||
| T12B5.6b.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | T12B5.6b.1:c.30G>A | ||||||
| HGVSp | CE39403:p.Gln10= | ||||||
| cDNA_position | 50 | ||||||
| CDS_position | 30 | ||||||
| Protein_position | 10 | ||||||
| Exon_number | 2/5 | ||||||
| Codon_change | caG/caA | ||||||
| Amino_acid_change | Q | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
