WormBase Tree Display for Variation: WBVar01340401
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| WBVar01340401 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01340401 | |||||
| Other_name | cewivar00163335 | ||||||
| Y23H5A.7c.1:c.444G>T | |||||||
| Y23H5A.7b.1:c.441G>T | |||||||
| CE49746:p.Pro148= | |||||||
| CE54491:p.Pro147= | |||||||
| HGVSg | CHROMOSOME_I:g.2626733C>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y23H5A | |||
| Flanking_sequences | GATTGCTGCTGAACCTTCTTTATCATCACTTCGAACATCTTCTTCTTGTC | GGATCCATTTCAGTTTCGAATTTCGTCTTGAAATGTTCCAGCGCGGCGAC | |||||
| Mapping_target | Y23H5A | ||||||
| Type_of_mutation | Substitution | c | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||||
| WGS_De_Bono | |||||||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539015779 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00305693 | |||||
| WBGene00000800 | |||||||
| Transcript | Y23H5A.12 | ||||||
| Y23H5A.7c.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | Y23H5A.7c.1:c.444G>T | ||||||
| HGVSp | CE49746:p.Pro148= | ||||||
| cDNA_position | 444 | ||||||
| CDS_position | 444 | ||||||
| Protein_position | 148 | ||||||
| Exon_number | 3/7 | ||||||
| Codon_change | ccG/ccT | ||||||
| Amino_acid_change | P | ||||||
| Y23H5A.7b.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | Y23H5A.7b.1:c.441G>T | ||||||
| HGVSp | CE54491:p.Pro147= | ||||||
| cDNA_position | 441 | ||||||
| CDS_position | 441 | ||||||
| Protein_position | 147 | ||||||
| Exon_number | 3/8 | ||||||
| Codon_change | ccG/ccT | ||||||
| Amino_acid_change | P | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
