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WormBase Tree Display for Variation: WBVar01339117

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Name Class

WBVar01339117EvidencePaper_evidenceWBPaper00037807
NamePublic_nameWBVar01339117
Other_namecewivar00153966
Y39E4B.9b.1:c.928-212T>C
Y39E4B.9c.1:c.1051-212T>C
Y39E4B.9d.1:c.1045-212T>C
Y39E4B.9a.1:c.*12-212T>C
Y39E4B.9a.2:c.*12-212T>C
HGVSgCHROMOSOME_III:g.13134378A>G
Sequence_detailsSMapS_parentSequenceY39E4B
Flanking_sequencesTAGGCTTAGGCTTAGGCTTAGGCTTAGACTTAGGCTTGGGCTTAGGCTTAACTTAGGCTTTGGCTTAAACTTCGGCTGAGGCTTGGCGTCACTGGCGAGC
Mapping_targetY39E4B
Type_of_mutationSubstitutionaGPaper_evidenceWBPaper00037807
SeqStatusSequenced
Variation_typeSNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisMillion_mutation_project_reanalysis
WBStrain00022850From_analysisMillion_mutation_project_reanalysis
WGS_De_Bono
WBStrain00022899From_analysisMillion_mutation_project_reanalysis
WBStrain00023286From_analysisMillion_mutation_project_reanalysis
LaboratoryAX
AnalysisWGS_De_Bono
Million_mutation_project_reanalysis
DB_infoDatabasedbSNP_ssss539193486
StatusLive
AffectsGeneWBGene00000267
TranscriptY39E4B.9c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.9c.1:c.1051-212T>C
Intron_number8/8
Y39E4B.9b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.9b.1:c.928-212T>C
Intron_number6/6
Y39E4B.9a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.9a.2:c.*12-212T>C
Intron_number9/9
Y39E4B.9a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.9a.1:c.*12-212T>C
Intron_number10/10
Y39E4B.9d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39E4B.9d.1:c.1045-212T>C
Intron_number9/10
ReferenceWBPaper00037807
MethodWGS_De_Bono