WormBase Tree Display for Variation: WBVar01339117
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WBVar01339117 | Evidence | Paper_evidence | WBPaper00037807 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | WBVar01339117 | |||||
Other_name | cewivar00153966 | ||||||
Y39E4B.9b.1:c.928-212T>C | |||||||
Y39E4B.9c.1:c.1051-212T>C | |||||||
Y39E4B.9d.1:c.1045-212T>C | |||||||
Y39E4B.9a.1:c.*12-212T>C | |||||||
Y39E4B.9a.2:c.*12-212T>C | |||||||
HGVSg | CHROMOSOME_III:g.13134378A>G | ||||||
Sequence_details | SMap | S_parent | Sequence | Y39E4B | |||
Flanking_sequences | TAGGCTTAGGCTTAGGCTTAGGCTTAGACTTAGGCTTGGGCTTAGGCTTA | ACTTAGGCTTTGGCTTAAACTTCGGCTGAGGCTTGGCGTCACTGGCGAGC | |||||
Mapping_target | Y39E4B | ||||||
Type_of_mutation | Substitution | a | G | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | ||||||
Variation_type | SNP | ||||||
Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||||
WGS_De_Bono | |||||||
WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||||
Analysis | WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | |||||||
DB_info | Database | dbSNP_ss | ss | 539193486 | |||
Status | Live | ||||||
Affects | Gene | WBGene00000267 | |||||
Transcript | Y39E4B.9c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y39E4B.9c.1:c.1051-212T>C | ||||||
Intron_number | 8/8 | ||||||
Y39E4B.9b.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y39E4B.9b.1:c.928-212T>C | ||||||
Intron_number | 6/6 | ||||||
Y39E4B.9a.2 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y39E4B.9a.2:c.*12-212T>C | ||||||
Intron_number | 9/9 | ||||||
Y39E4B.9a.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y39E4B.9a.1:c.*12-212T>C | ||||||
Intron_number | 10/10 | ||||||
Y39E4B.9d.1 | VEP_consequence | intron_variant | |||||
VEP_impact | MODIFIER | ||||||
HGVSc | Y39E4B.9d.1:c.1045-212T>C | ||||||
Intron_number | 9/10 | ||||||
Reference | WBPaper00037807 | ||||||
Method | WGS_De_Bono |