WormBase Tree Display for Variation: WBVar01306303
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| WBVar01306303 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01306303 | |||||
| Other_name | cewivar00355387 | ||||||
| CE48309:p.Pro411Ser | |||||||
| F10C1.7a.1:c.1211+108C>T | |||||||
| F10C1.7c.1:c.1160+254C>T | |||||||
| F10C1.7e.1:c.1231C>T | |||||||
| HGVSg | CHROMOSOME_II:g.5752975C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | F10C1 | |||
| Flanking_sequences | AATCTAGTTTTATTTCCTAGTTGACTTCCAGAACAGAAGGGGATTCCACT | CCGTTGTTTTAAATGATCAGCAATACTCTGACAGTCATCAATATCAGCAA | |||||
| Mapping_target | F10C1 | ||||||
| Type_of_mutation | Substitution | c | T | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||||
| WGS_De_Bono | |||||||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539163953 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00002054 | |||||
| Transcript | F10C1.7a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | F10C1.7a.1:c.1211+108C>T | ||||||
| Intron_number | 7/10 | ||||||
| F10C1.7e.1 | VEP_consequence | missense_variant | |||||
| VEP_impact | MODERATE | ||||||
| HGVSc | F10C1.7e.1:c.1231C>T | ||||||
| HGVSp | CE48309:p.Pro411Ser | ||||||
| cDNA_position | 1231 | ||||||
| CDS_position | 1231 | ||||||
| Protein_position | 411 | ||||||
| Exon_number | 7/11 | ||||||
| Codon_change | Ccc/Tcc | ||||||
| Amino_acid_change | P/S | ||||||
| F10C1.7c.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | F10C1.7c.1:c.1160+254C>T | ||||||
| Intron_number | 6/9 | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
