WormBase Tree Display for Variation: WBVar01246474
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WBVar01246474 | Evidence | Paper_evidence | WBPaper00037807 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01246474 | ||||
Other_name | cewivar00654045 | |||||
F53C3.13b.1:c.848+374del | ||||||
F53C3.13a.1:c.848+374del | ||||||
F53C3.13e.1:c.848+374del | ||||||
F53C3.13d.2:c.848+374del | ||||||
F53C3.13d.1:c.848+374del | ||||||
F53C3.13c.1:c.848+374del | ||||||
F53C3.13f.1:c.854+374del | ||||||
HGVSg | CHROMOSOME_II:g.3925146del | |||||
Sequence_details | SMap | S_parent | Sequence | F53C3 | ||
Flanking_sequences | TAAAAATCGGTGTGCGCCTTTAAAAAAACTACCGTAACCCTTCAAGGGAC | TTTTTTTAAAAGATGTTCACATAAAGTTAGAGGTAAAAATCGAATTTCAA | ||||
Mapping_target | F53C3 | |||||
Type_of_mutation | Deletion | T | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||||
WGS_De_Bono | ||||||
Laboratory | AX | |||||
Analysis | WGS_De_Bono | |||||
Million_mutation_project_reanalysis | ||||||
DB_info | Database | dbSNP_ss | ss | 539006285 | ||
Status | Live | |||||
Affects | Gene | WBGene00018756 | ||||
Transcript | F53C3.13e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | F53C3.13e.1:c.848+374del | |||||
Intron_number | 4/6 | |||||
F53C3.13b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F53C3.13b.1:c.848+374del | |||||
Intron_number | 4/6 | |||||
F53C3.13d.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F53C3.13d.1:c.848+374del | |||||
Intron_number | 4/7 | |||||
F53C3.13a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F53C3.13a.1:c.848+374del | |||||
Intron_number | 4/6 | |||||
F53C3.13d.2 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F53C3.13d.2:c.848+374del | |||||
Intron_number | 4/6 | |||||
F53C3.13f.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F53C3.13f.1:c.854+374del | |||||
Intron_number | 4/6 | |||||
F53C3.13c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | F53C3.13c.1:c.848+374del | |||||
Intron_number | 4/6 | |||||
Reference | WBPaper00037807 | |||||
Method | WGS_De_Bono |