WormBase Tree Display for Variation: WBVar01244989
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| WBVar01244989 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01244989 | |||||
| Other_name | cewivar00307712 | ||||||
| F54D5.15b.1:c.1188C>T | |||||||
| F54D5.15b.3:c.1188C>T | |||||||
| F54D5.15a.1:c.1413C>T | |||||||
| CE32896:p.Val471= | |||||||
| F54D5.15b.2:c.1188C>T | |||||||
| CE37240:p.Val469= | |||||||
| CE37239:p.Val396= | |||||||
| F54D5.15c.1:c.1407C>T | |||||||
| HGVSg | CHROMOSOME_II:g.11559105G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | F54D5 | |||
| Flanking_sequences | GTTTTCAAAAATCTTACTCTTTGTGGTTCCTCATCACAAATTCTCAACTC | ACTGGCAATATCTGAAGATCGTCCATTTCTGCGAGAAGATCATGTGGGAT | |||||
| Mapping_target | F54D5 | ||||||
| Type_of_mutation | Substitution | g | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain (12) | |||||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539082434 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00010057 | |||||
| Transcript | F54D5.15b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | ||||||
| HGVSc | F54D5.15b.1:c.1188C>T | ||||||
| HGVSp | CE37239:p.Val396= | ||||||
| cDNA_position | 1459 | ||||||
| CDS_position | 1188 | ||||||
| Protein_position | 396 | ||||||
| Exon_number | 9/11 | ||||||
| Codon_change | gtC/gtT | ||||||
| Amino_acid_change | V | ||||||
| F54D5.15a.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | F54D5.15a.1:c.1413C>T | ||||||
| HGVSp | CE32896:p.Val471= | ||||||
| cDNA_position | 1487 | ||||||
| CDS_position | 1413 | ||||||
| Protein_position | 471 | ||||||
| Exon_number | 9/11 | ||||||
| Codon_change | gtC/gtT | ||||||
| Amino_acid_change | V | ||||||
| F54D5.15c.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | F54D5.15c.1:c.1407C>T | ||||||
| HGVSp | CE37240:p.Val469= | ||||||
| cDNA_position | 1407 | ||||||
| CDS_position | 1407 | ||||||
| Protein_position | 469 | ||||||
| Exon_number | 8/9 | ||||||
| Codon_change | gtC/gtT | ||||||
| Amino_acid_change | V | ||||||
| F54D5.15b.3 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | F54D5.15b.3:c.1188C>T | ||||||
| HGVSp | CE37239:p.Val396= | ||||||
| cDNA_position | 1336 | ||||||
| CDS_position | 1188 | ||||||
| Protein_position | 396 | ||||||
| Exon_number | 7/9 | ||||||
| Codon_change | gtC/gtT | ||||||
| Amino_acid_change | V | ||||||
| F54D5.15b.2 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | F54D5.15b.2:c.1188C>T | ||||||
| HGVSp | CE37239:p.Val396= | ||||||
| cDNA_position | 1381 | ||||||
| CDS_position | 1188 | ||||||
| Protein_position | 396 | ||||||
| Exon_number | 8/9 | ||||||
| Codon_change | gtC/gtT | ||||||
| Amino_acid_change | V | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
