WormBase Tree Display for Variation: WBVar00604004

WBVar00604004 Name: Public_name: tm5728
    Other_name: K03E6.5a.1:c.264_567+6del
      K03E6.5b.1:c.276_579+6del
    HGVSg: CHROMOSOME_X:g.1058956_1059323del
  Sequence_details: SMap: S_parent: Sequence: K03E6
    Flanking_sequences: atcagtttattatacttttgggaaaaaaaa cagggaatgatgaagatcattccaggacca
    Mapping_target: K03E6
    Source_location: 7 CHROMOSOME_X 1058955 1059324 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5728_external
      tm5728_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5728
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006741
    Transcript: K03E6.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K03E6.5b.1:c.276_579+6del
        cDNA_position: 286-?
        CDS_position: 276-?
        Protein_position: 92-?
        Intron_number: 4-5/7
        Exon_number: 4-5/8
      K03E6.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K03E6.5a.1:c.264_567+6del
        cDNA_position: 268-?
        CDS_position: 264-?
        Protein_position: 88-?
        Intron_number: 4-5/7
        Exon_number: 4-5/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 4815/4816-5183/5184 (368 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele