WormBase Tree Display for Variation: WBVar00603581
expand all nodes | collapse all nodes | view schema
| WBVar00603581 | Evidence | Paper_evidence | WBPaper00040707 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00603581 | ||||
| Other_name (15) | ||||||
| HGVSg | CHROMOSOME_X:g.10824185G>A | |||||
| Sequence_details | SMap | S_parent | Sequence | F31B12 | ||
| Flanking_sequences | TCGTATTTTGTACACTAACAACAATTTTTGATCTGAAAATCTAAAATTGAATTCACTTACTCATCATGTTGAACA | ATTGACTCGACTTCCTACTCGATCACCCATTCCAACGTACACTAAAACTCTAGCAGCATGGTACTTTACAAAAGT | ||||
| Mapping_target | F31B12 | |||||
| Type_of_mutation | Substitution | g | a | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00027649 | From_analysis | WGS_Stein | |||
| WBStrain00027653 | From_analysis | WGS_Andersen | ||||
| WBStrain00027656 | From_analysis | WGS_Andersen | ||||
| Laboratory | QX | |||||
| Person | WBPerson1730 | |||||
| Analysis | WGS_Stein | |||||
| WGS_Andersen | ||||||
| DB_info | Database | dbSNP_ss | ss | ss477720786 | ||
| History | Acquires_merge | WBVar01470955 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00004036 | ||||
| Transcript | F31B12.1j.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | F31B12.1j.1:c.2245C>T | |||||
| HGVSp | CE53177:p.Leu749= | |||||
| cDNA_position | 2245 | |||||
| CDS_position | 2245 | |||||
| Protein_position | 749 | |||||
| Exon_number | 19/64 | |||||
| Codon_change | Ctg/Ttg | |||||
| Amino_acid_change | L | |||||
| F31B12.1g.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | F31B12.1g.1:c.2245C>T | |||||
| HGVSp | CE53231:p.Leu749= | |||||
| cDNA_position | 2245 | |||||
| CDS_position | 2245 | |||||
| Protein_position | 749 | |||||
| Exon_number | 19/64 | |||||
| Codon_change | Ctg/Ttg | |||||
| Amino_acid_change | L | |||||
| F31B12.1d.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | F31B12.1d.1:c.2416C>T | |||||
| HGVSp | CE53487:p.Leu806= | |||||
| cDNA_position | 2416 | |||||
| CDS_position | 2416 | |||||
| Protein_position | 806 | |||||
| Exon_number | 20/65 | |||||
| Codon_change | Ctg/Ttg | |||||
| Amino_acid_change | L | |||||
| F31B12.1h.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | F31B12.1h.1:c.2245C>T | |||||
| HGVSp | CE53334:p.Leu749= | |||||
| cDNA_position | 2245 | |||||
| CDS_position | 2245 | |||||
| Protein_position | 749 | |||||
| Exon_number | 19/64 | |||||
| Codon_change | Ctg/Ttg | |||||
| Amino_acid_change | L | |||||
| F31B12.1l.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | F31B12.1l.1:c.2245C>T | |||||
| HGVSp | CE53383:p.Leu749= | |||||
| cDNA_position | 2245 | |||||
| CDS_position | 2245 | |||||
| Protein_position | 749 | |||||
| Exon_number | 19/64 | |||||
| Codon_change | Ctg/Ttg | |||||
| Amino_acid_change | L | |||||
| F31B12.1i.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | F31B12.1i.1:c.2416C>T | |||||
| HGVSp | CE53434:p.Leu806= | |||||
| cDNA_position | 2416 | |||||
| CDS_position | 2416 | |||||
| Protein_position | 806 | |||||
| Exon_number | 20/65 | |||||
| Codon_change | Ctg/Ttg | |||||
| Amino_acid_change | L | |||||
| F31B12.1k.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | F31B12.1k.1:c.2416C>T | |||||
| HGVSp | CE53272:p.Leu806= | |||||
| cDNA_position | 2416 | |||||
| CDS_position | 2416 | |||||
| Protein_position | 806 | |||||
| Exon_number | 20/65 | |||||
| Codon_change | Ctg/Ttg | |||||
| Amino_acid_change | L | |||||
| Reference | WBPaper00040707 | |||||
| Remark | validatation rate is over 97% | |||||
| Method | WGS_Stein |
