WormBase Tree Display for Variation: WBVar00601596

WBVar00601596 Name: Public_name: WBVar00601596
    Other_name: oicr_ce15
      CE53975:p.Thr482=
      Y8A9A.2.1:c.1446T>A
    HGVSg: CHROMOSOME_II:g.3797273T>A
  Sequence_details: SMap: S_parent: Sequence: Y8A9A
    Flanking_sequences: AACCGAGTCAACAACAGAATCAACTACGGAGTCTACCAGCACATCCACTGATTCTACCACGACCGAGTCTACCAC GAATCAACTACGGAGTCTACCAGCACATCCACTGATTCTACTACAACCGAGTCTACCACAGAATCAACTACGGAG
    Mapping_target: Y8A9A
    Type_of_mutation: Substitution: t a
    SeqStatus: Sequenced
  Variation_type: SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00027649 From_analysis: WGS_Stein
    Analysis: WGS_Stein
    DB_info: Database: dbSNP_ss ss ss477718123
    Status: Live
  Affects: Gene: WBGene00021171
    Transcript: Y8A9A.2.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y8A9A.2.1:c.1446T>A
        HGVSp: CE53975:p.Thr482=
        cDNA_position: 1446
        CDS_position: 1446
        Protein_position: 482
        Exon_number: 5/19
        Codon_change: acT/acA
        Amino_acid_change: T
  Remark: validated by Pacific Biosciences sequencing
  Method: WGS_Stein