WormBase Tree Display for Variation: WBVar00600940

WBVar00600940 Name: Public_name: tm5536
    Other_name: B0212.5.1:c.422+7_1026del
    HGVSg: CHROMOSOME_IV:g.3555491_3556227del
  Sequence_details: SMap: S_parent: Sequence: B0212
    Flanking_sequences: aaactcacttgtagacccgtccggctgaat ttttacctgttcaacaaaagatggatcaaa
    Mapping_target: B0212
    Source_location: 7 CHROMOSOME_IV 3555490 3556228 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5536_external
      tm5536_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5536
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003889
    Transcript: B0212.5.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0212.5.1:c.422+7_1026del
        cDNA_position: ?-1026
        CDS_position: ?-1026
        Protein_position: ?-342
        Intron_number: 3-5/14
        Exon_number: 4-6/15
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 15351/15352-16088/16089 (737 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele