WormBase Tree Display for Variation: WBVar00317304

WBVar00317304 Name: Public_name: tm5011
    Other_name: B0218.1.1:c.76-6_523+61delinsTG
      B0218.1.3:c.76-6_523+61delinsTG
      B0218.1.2:c.76-6_523+61delinsTG
    HGVSg: CHROMOSOME_IV:g.8159691_8160205delinsTG
  Sequence_details: SMap: S_parent: Sequence: B0218
    Flanking_sequences: caaaagttatttacttttaatgtttataaa tttataggtccaggttcagaaattgagttt
    Mapping_target: B0218
    Source_location: 7 CHROMOSOME_IV 8159690 8160206 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TG
      Deletion
    PCR_product: tm5011_external
      tm5011_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5011
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00015047
    Transcript: B0218.1.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0218.1.3:c.76-6_523+61delinsTG
        Intron_number: 2-3/7
        Exon_number: 3/8
      B0218.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0218.1.1:c.76-6_523+61delinsTG
        Intron_number: 2-3/7
        Exon_number: 3/8
      B0218.1.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0218.1.2:c.76-6_523+61delinsTG
        Intron_number: 2-3/7
        Exon_number: 3/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype: WBPhenotype:0001911 Paper_evidence: WBPaper00041646
        Curator_confirmed: WBPerson1068
        Remark: Axon regeneration defective in adult D-type motor neurons. Paper_evidence: WBPaper00041646
            Curator_confirmed: WBPerson1068
        EQ_annotations: Anatomy_term: WBbt:0005303 PATO:0000460 Paper_evidence: WBPaper00041646
                Curator_confirmed: WBPerson1068
            WBbt:0005270 PATO:0000460 Paper_evidence: WBPaper00041646
                Curator_confirmed: WBPerson1068
          Life_stage: WBls:0000041 PATO:0000460 Paper_evidence: WBPaper00041646
                Curator_confirmed: WBPerson1068
          GO_term: GO:0031103 PATO:0001511 Paper_evidence: WBPaper00041646
                Curator_confirmed: WBPerson1068
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Reference: WBPaper00041646
  Remark: 13263/13264-TG-13778/13779 (515 bp deletion + 2 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele