WormBase Tree Display for Variation: WBVar00277130

WBVar00277130 Evidence: Paper_evidence: WBPaper00036200
  Name: Public_name: ok5644
    Other_name: R13A5.1c.1:c.1725+209C>T
      R13A5.1a.2:c.1659+209C>T
      R13A5.1a.1:c.1659+209C>T
      R13A5.1b.1:c.1689+209C>T
      R13A5.1e.1:c.1671+209C>T
      R13A5.1d.1:c.1659+209C>T
    HGVSg: CHROMOSOME_III:g.7590013C>T
  Sequence_details: SMap: S_parent: Sequence: R13A5
    Flanking_sequences: TAATTATTGCGGCGAAAAATGAAAGATGAT AAGTGCTTACTCGCAGCTAAAAATGAAATT
    Mapping_target: R13A5
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00033306
    Laboratory: RB
    Person: WBPerson46
    Analysis: Million_Mutation_Pilot_Project
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00000846
    Transcript: R13A5.1d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: R13A5.1d.1:c.1659+209C>T
        Intron_number: 8/11
      R13A5.1c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: R13A5.1c.1:c.1725+209C>T
        Intron_number: 8/10
      R13A5.1b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: R13A5.1b.1:c.1689+209C>T
        Intron_number: 9/11
      R13A5.1a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: R13A5.1a.1:c.1659+209C>T
        Intron_number: 7/10
      R13A5.1a.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: R13A5.1a.2:c.1659+209C>T
        Intron_number: 8/11
      R13A5.1e.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: R13A5.1e.1:c.1671+209C>T
        Intron_number: 8/11
  Isolation: Mutagen: EMS
  Reference: WBPaper00036200
  Remark: Allele identified through whole-genome sequencing by the Gene Knockout Consortium Paper_evidence: WBPaper00036200
    Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele