WormBase Tree Display for Variation: WBVar00275633
expand all nodes | collapse all nodes | view schema
| WBVar00275633 | Evidence | Paper_evidence | WBPaper00036200 | ||
|---|---|---|---|---|---|
| Name | Public_name | gk1855 | |||
| Other_name | B0285.1c.1:c.*152C>T | ||||
| B0285.1b.2:c.*152C>T | |||||
| B0285.1a.1:c.*152C>T | |||||
| B0285.1c.2:c.*152C>T | |||||
| B0285.1b.1:c.*152C>T | |||||
| B0285.1a.2:c.*152C>T | |||||
| HGVSg | CHROMOSOME_III:g.4340384C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | B0285 | |
| Flanking_sequences | TGTCTAAATTTTTAATTGATATTCTGTGTTTCCTCTCATATATATTTTTT | CTCTATTTGAAAATTTATTGTTTAGCTTTTCTTCCCCCGCCTCATACCTC | |||
| Mapping_target | B0285 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00036970 | ||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| Analysis | Million_Mutation_Pilot_Project | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00007135 | |||
| Transcript | B0285.1c.2 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0285.1c.2:c.*152C>T | ||||
| cDNA_position | 2357 | ||||
| Exon_number | 15/15 | ||||
| B0285.1b.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0285.1b.2:c.*152C>T | ||||
| cDNA_position | 2361 | ||||
| Exon_number | 15/15 | ||||
| B0285.1c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0285.1c.1:c.*152C>T | ||||
| cDNA_position | 2508 | ||||
| Exon_number | 17/17 | ||||
| B0285.1a.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0285.1a.2:c.*152C>T | ||||
| cDNA_position | 2353 | ||||
| Exon_number | 15/15 | ||||
| B0285.1b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0285.1b.1:c.*152C>T | ||||
| cDNA_position | 2520 | ||||
| Exon_number | 17/17 | ||||
| B0285.1a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0285.1a.1:c.*152C>T | ||||
| cDNA_position | 2481 | ||||
| Exon_number | 17/17 | ||||
| Isolation | Mutagen | EMS | |||
| Reference | WBPaper00036200 | ||||
| Remark | Allele identified through whole-genome sequencing by the Gene Knockout Consortium | Paper_evidence | WBPaper00036200 | ||
| Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||
| Method | KO_consortium_allele |
