WormBase Tree Display for Variation: WBVar00275065
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| WBVar00275065 | Evidence | Paper_evidence | WBPaper00024480 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | vs19 | |||||
| HGVSg | CHROMOSOME_II:g.6109478_6111040del | ||||||
| Sequence_details | SMap | S_parent | Sequence | C29H12 | |||
| Flanking_sequences | gagttcaggtaatcatttttagtgataaat | gattaatattatattcttgtttttttctag | |||||
| Mapping_target | C29H12 | ||||||
| Type_of_mutation | Deletion | ||||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00026361 | ||||||
| Laboratory | LX | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00016236 | |||||
| WBGene00004346 | |||||||
| Transcript | C29H12.3a.2 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | ||||||
| Intron_number | 5/6 | ||||||
| Exon_number | 6-7/7 | ||||||
| C29H12.3c.3 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 3/4 | ||||||
| Exon_number | 4-5/5 | ||||||
| C29H12.5.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 9-10/11 | ||||||
| Exon_number | 10-12/12 | ||||||
| C29H12.3b.2 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 4/5 | ||||||
| Exon_number | 5-6/6 | ||||||
| C29H12.3c.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 4/5 | ||||||
| Exon_number | 5-6/6 | ||||||
| C29H12.3a.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 6/7 | ||||||
| Exon_number | 7-8/8 | ||||||
| C29H12.3c.2 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 4/5 | ||||||
| Exon_number | 5-6/6 | ||||||
| C29H12.3b.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 5/6 | ||||||
| Exon_number | 6-7/7 | ||||||
| Interactor | WBInteraction000569525 | ||||||
| WBInteraction000569527 | |||||||
| Genetics | Interpolated_map_position | II | -0.475258 | ||||
| Mapping_data | In_multi_point | 4907 | |||||
| Description | Phenotype (9) | ||||||
| Phenotype_not_observed | WBPhenotype:0002535 | Paper_evidence | WBPaper00028963 | ||||
| Curator_confirmed | WBPerson48 | ||||||
| Remark | based on dye filling | Paper_evidence | WBPaper00028963 | ||||
| Curator_confirmed | WBPerson48 | ||||||
| Recessive | Paper_evidence | WBPaper00028963 | |||||
| Curator_confirmed | WBPerson48 | ||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00028963 | ||||
| Curator_confirmed | WBPerson48 | ||||||
| Reference | WBPaper00031936 | ||||||
| WBPaper00028963 | |||||||
| WBPaper00048845 | |||||||
| WBPaper00043948 | |||||||
| Remark | vs19 is a 1563 bp mutation | ||||||
| Method | Deletion_allele |
