WormBase Tree Display for Variation: WBVar00275054
expand all nodes | collapse all nodes | view schema
| WBVar00275054 | Evidence | Paper_evidence | WBPaper00004593 | ||
|---|---|---|---|---|---|
| Name | Public_name | vp1 | |||
| HGVSg | CHROMOSOME_X:g.13940296_13943025del | ||||
| Sequence_details | SMap | S_parent | Sequence | K02B9 | |
| Flanking_sequences | ttctcaacagctcaccaacgcatccataca | tggcattctttaaactattaattttacttg | |||
| Mapping_target | K02B9 | ||||
| Type_of_mutation | Insertion | ||||
| Deletion | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00022238 | ||||
| WBStrain00034019 | |||||
| WBStrain00034021 | |||||
| Laboratory | JG | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00001251 | |||
| Transcript | K02B9.4d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| cDNA_position | 182-? | ||||
| CDS_position | 182-? | ||||
| Protein_position | 61-? | ||||
| Intron_number | 2-3/3 | ||||
| Exon_number | 2-4/4 | ||||
| K02B9.4a.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 561-? | ||||
| CDS_position | 353-? | ||||
| Protein_position | 118-? | ||||
| Intron_number | 6-7/8 | ||||
| Exon_number | 6-9/9 | ||||
| K02B9.4a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 436-? | ||||
| CDS_position | 353-? | ||||
| Protein_position | 118-? | ||||
| Intron_number | 5-6/7 | ||||
| Exon_number | 5-8/8 | ||||
| K02B9.4a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 635-? | ||||
| CDS_position | 353-? | ||||
| Protein_position | 118-? | ||||
| Intron_number | 7-8/9 | ||||
| Exon_number | 7-10/10 | ||||
| K02B9.4c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 299-? | ||||
| CDS_position | 299-? | ||||
| Protein_position | 100-? | ||||
| Intron_number | 3-4/4 | ||||
| Exon_number | 3-5/5 | ||||
| K02B9.4b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 626-? | ||||
| CDS_position | 626-? | ||||
| Protein_position | 209-? | ||||
| Intron_number | 6-7/7 | ||||
| Exon_number | 6-8/8 | ||||
| Interactor | WBInteraction000050584 | ||||
| WBInteraction000050588 | |||||
| WBInteraction000050589 | |||||
| WBInteraction000503712 | |||||
| WBInteraction000503714 | |||||
| WBInteraction000519372 | |||||
| WBInteraction000556934 | |||||
| WBInteraction000556935 | |||||
| WBInteraction000556936 | |||||
| Isolation | Transposon_excision | Tc1 | |||
| Genetics | Interpolated_map_position | X | 15.6109 | ||
| Reference | WBPaper00004593 | ||||
| Remark | Deletion endpoints estimated from figure 6 in paper [krb 030408] | Paper_evidence | WBPaper00004593 | ||
| Method | Deletion_and_insertion_allele |
