WormBase Tree Display for Variation: WBVar00270852
expand all nodes | collapse all nodes | view schema
| WBVar00270852 | Evidence | Paper_evidence | WBPaper00005369 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00270852 | |||
| Other_name | uCE4-1240 | ||||
| CE30893:p.Phe391LeufsTer7 | |||||
| CE30892:p.Phe393LeufsTer7 | |||||
| C39E9.14b.1:c.1166_1167insT | |||||
| C39E9.14a.1:c.1172_1173insT | |||||
| HGVSg | CHROMOSOME_IV:g.13097322dup | ||||
| Sequence_details | SMap | S_parent | Sequence | C39E9 | |
| Flanking_sequences | GAAGGAGAGCTCACCTTGCTCGGCTTGTCCTGAAATATGGAAATTCACATAGAAAAAAGATCTAAGATTGATTTACCTTATTGAGCAAGTTGGAGAAGAA | TTGGCGAGTGGACTGTCCTTATCGGTAGGCTCTTCTTGCATAGTCCTCGGCTTGGGAGCGGCCGTAGTGGTTGAAGTTGCCAGGATGTCCATCAACTTCTT | |||
| Mapping_target | C39E9 | ||||
| Type_of_mutation | Insertion | A | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| Laboratory | EU | ||||
| Analysis | SNP_Swan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00001007 | |||
| Transcript | C39E9.14a.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | C39E9.14a.1:c.1172_1173insT | ||||
| HGVSp | CE30892:p.Phe393LeufsTer7 | ||||
| cDNA_position | 1175-1176 | ||||
| CDS_position | 1172-1173 | ||||
| Protein_position | 391 | ||||
| Exon_number | 7/9 | ||||
| Codon_change | aat/aaTt | ||||
| Amino_acid_change | N/NX | ||||
| C39E9.14b.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C39E9.14b.1:c.1166_1167insT | ||||
| HGVSp | CE30893:p.Phe391LeufsTer7 | ||||
| cDNA_position | 1228-1229 | ||||
| CDS_position | 1166-1167 | ||||
| Protein_position | 389 | ||||
| Exon_number | 7/9 | ||||
| Codon_change | aat/aaTt | ||||
| Amino_acid_change | N/NX | ||||
| Genetics | Mapping_data | In_multi_point | 4831 | ||
| Reference | WBPaper00005369 | ||||
| Method | SNP_Swan |
