WormBase Tree Display for Variation: WBVar00267926
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WBVar00267926 | Evidence | Paper_evidence | WBPaper00005369 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00267926 | |||
Other_name | uCE2-748 | ||||
F56D12.1b.1:c.38del | |||||
CE33403:p.Lys14AsnfsTer10 | |||||
F56D12.1c.1:c.38del | |||||
CE37118:p.Lys14AsnfsTer10 | |||||
CE29047:p.Lys14AsnfsTer10 | |||||
F56D12.1a.1:c.38del | |||||
F56D12.1a.2:c.38del | |||||
HGVSg | CHROMOSOME_II:g.1309714del | ||||
Sequence_details | SMap | S_parent | Sequence | F56D12 | |
Flanking_sequences | TTCTTTGCTTCCTTTTCGATACTCTAAAATCGGCTCATTTGTCTTCTTTTTGAGAAAATCCGCCGATGTTAGACCGCTGTACGTGCTGGCGGCGCATTTT | GTGTGATTAAGGAGCGTCGAGCTGCGAATGAGAGCATTTTCTGCAAAAATGAGAATAAAATGAGCTTTTAATCGATTTAATTCGATAAAACGTGGATAAA | |||
Mapping_target | F56D12 | ||||
Type_of_mutation | Deletion | T | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
Analysis | SNP_Swan | ||||
Status | Live | ||||
Affects | Gene | WBGene00000112 | |||
Transcript | F56D12.1b.1 | VEP_consequence | frameshift_variant | ||
VEP_impact | HIGH | ||||
HGVSc | F56D12.1b.1:c.38del | ||||
HGVSp | CE33403:p.Lys14AsnfsTer10 | ||||
cDNA_position | 40 | ||||
CDS_position | 38 | ||||
Protein_position | 13 | ||||
Exon_number | 2/8 | ||||
Codon_change | cAa/ca | ||||
Amino_acid_change | Q/X | ||||
F56D12.1a.2 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F56D12.1a.2:c.38del | ||||
HGVSp | CE29047:p.Lys14AsnfsTer10 | ||||
cDNA_position | 137 | ||||
CDS_position | 38 | ||||
Protein_position | 13 | ||||
Exon_number | 3/10 | ||||
Codon_change | cAa/ca | ||||
Amino_acid_change | Q/X | ||||
F56D12.1a.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F56D12.1a.1:c.38del | ||||
HGVSp | CE29047:p.Lys14AsnfsTer10 | ||||
cDNA_position | 41 | ||||
CDS_position | 38 | ||||
Protein_position | 13 | ||||
Exon_number | 2/9 | ||||
Codon_change | cAa/ca | ||||
Amino_acid_change | Q/X | ||||
F56D12.1c.1 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F56D12.1c.1:c.38del | ||||
HGVSp | CE37118:p.Lys14AsnfsTer10 | ||||
cDNA_position | 38 | ||||
CDS_position | 38 | ||||
Protein_position | 13 | ||||
Exon_number | 1/6 | ||||
Codon_change | cAa/ca | ||||
Amino_acid_change | Q/X | ||||
Reference | WBPaper00005369 | ||||
Method | SNP_Swan |