WormBase Tree Display for Variation: WBVar00252808

WBVar00252808 Name: Public_name: tm4300
    Other_name: Y105C5B.2a.1:c.538_675-176delinsTTTAGCAAAAA
      Y105C5B.2b.1:c.538_675-176delinsTTTAGCAAAAA
    HGVSg: CHROMOSOME_IV:g.15875046_15875425delinsTTTAGCAAAAA
  Sequence_details: SMap: S_parent: Sequence: Y105C5B
    Flanking_sequences: gtgtttttggaaaccgatgggctcagcaat ttttatagtttctgcgatcttataaatttt
    Mapping_target: Y105C5B
    Source_location: 7 CHROMOSOME_IV 15875045 15875426 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TTTAGCAAAAA
      Deletion
    PCR_product: tm4300_external
      tm4300_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 4300
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00001549
      WBGene00046820
    Transcript: Y105C5B.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y105C5B.2b.1:c.538_675-176delinsTTTAGCAAAAA
        cDNA_position: 538-?
        CDS_position: 538-?
        Protein_position: 180-?
        Intron_number: 4-5/17
        Exon_number: 4-5/18
      Y105C5B.159
      Y105C5B.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y105C5B.2a.1:c.538_675-176delinsTTTAGCAAAAA
        cDNA_position: 565-?
        CDS_position: 538-?
        Protein_position: 180-?
        Intron_number: 5-6/19
        Exon_number: 5-6/20
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0001765 Paper_evidence: WBPaper00037908
        Curator_confirmed: WBPerson557
  Reference: WBPaper00037908
  Remark: 11322/11323-TTTAGCAAAAA-11702/11703 (380 bp deletion + 11 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele