WormBase Tree Display for Variation: WBVar00252189

WBVar00252189 Name: Public_name: tm3521
    Other_name: F38G1.1.1:c.253+44_558del
    HGVSg: CHROMOSOME_X:g.482697_483105del
  Sequence_details: SMap: S_parent: Sequence: F38G1
    Flanking_sequences: ttgtatttttttttcattcttaacgaaaat ggaatcattttgtgttgcgactggaatcca
    Mapping_target: F38G1
    Source_location: 7 CHROMOSOME_X 482696 483106 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3521_external
      tm3521_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3521
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000484
    Transcript: F38G1.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F38G1.1.1:c.253+44_558del
        cDNA_position: ?-559
        CDS_position: ?-558
        Protein_position: ?-186
        Intron_number: 3-4/15
        Exon_number: 4-5/16
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 14468/14469-14877/14878 (409 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele