WormBase Tree Display for Variation: WBVar00251849

WBVar00251849 Name: Public_name: tm3067
    Other_name: C05C8.9b.2:c.-43_345del
      C05C8.9a.1:c.-43_345del
      C05C8.9b.1:c.-43_345del
    HGVSg: CHROMOSOME_V:g.7237515_7238007del
  Sequence_details: SMap: S_parent: Sequence: C05C8
    Flanking_sequences: gtagtttaacgtgtacgtcatttcctcctt cctgagagaaaccttctggtcgatcgagcg
    Mapping_target: C05C8
    Source_location: 7 CHROMOSOME_V 7237514 7238008 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3067_external
      tm3067_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3067
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00015466
    Transcript: C05C8.9b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C05C8.9b.1:c.-43_345del
        cDNA_position: 103-490
        CDS_position: ?-345
        Protein_position: ?-115
        Intron_number: 2-3/5
        Exon_number: 1-4/6
      C05C8.9a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C05C8.9a.1:c.-43_345del
        cDNA_position: 135-522
        CDS_position: ?-345
        Protein_position: ?-115
        Intron_number: 2-3/6
        Exon_number: 1-4/7
      C05C8.9b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C05C8.9b.2:c.-43_345del
        cDNA_position: 100-487
        CDS_position: ?-345
        Protein_position: ?-115
        Intron_number: 2-3/4
        Exon_number: 1-4/5
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description (2)
  Disease_info: Models_disease: DOID:0050779
    Models_disease_in_annotation: WBDOannot00000206
  Reference: WBPaper00035062
  Remark: 13498/13499-13991/13992 (493 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele