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WormBase Tree Display for Variation: WBVar00251571

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Name Class

WBVar00251571NamePublic_nametm2727
Other_nameY37D8A.23c.1:c.713_984del
CE20226:p.Ser313LeufsTer7
Y37D8A.23b.1:c.938_1209del
Y37D8A.23a.1:c.938_1209del
CE31832:p.Ser313LeufsTer7
CE32012:p.Ser238LeufsTer7
HGVSgCHROMOSOME_III:g.12948185_12948456del
Sequence_detailsSMapS_parentSequenceY37D8A
Flanking_sequencesacaagctggcaggaattgagagagctaatttattttaccaggagaattaaggaaactgaa
Mapping_targetY37D8A
Source_location7CHROMOSOME_III1294818412948457Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm2727_external
tm2727_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq2727
NBP_allele
StatusLive
AffectsGeneWBGene00006762
TranscriptY37D8A.23c.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScY37D8A.23c.1:c.713_984del
HGVSpCE32012:p.Ser238LeufsTer7
cDNA_position713-984
CDS_position713-984
Protein_position238-328
Exon_number4/6
Codon_changetCAGTGACATGGAATCCACATAAGCTCATGGGAGCACTTCTCCAGTGCTCGGCATGCTTGTTCCGTCAGGATGGACTACTGTTCCAGTGTAATCAAATGTCGGCTGATTATCTATTCCAACAAGATAAACCGTACGATGTGAGCTTTGATACTGGAGATAAAGCCATTCAATGTGGACGGCACAATGATGTTTTCAAGCTTTGGTTGATGTGGAAGAGCAAGGGAATGGAGGGATATCGTCAGCAAATTAATAAGTTGATGGATTTGGCCAAC/t
Amino_acid_changeSVTWNPHKLMGALLQCSACLFRQDGLLFQCNQMSADYLFQQDKPYDVSFDTGDKAIQCGRHNDVFKLWLMWKSKGMEGYRQQINKLMDLAN/X
Y37D8A.23b.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScY37D8A.23b.1:c.938_1209del
HGVSpCE31832:p.Ser313LeufsTer7
cDNA_position938-1209
CDS_position938-1209
Protein_position313-403
Exon_number6/9
Codon_changetCAGTGACATGGAATCCACATAAGCTCATGGGAGCACTTCTCCAGTGCTCGGCATGCTTGTTCCGTCAGGATGGACTACTGTTCCAGTGTAATCAAATGTCGGCTGATTATCTATTCCAACAAGATAAACCGTACGATGTGAGCTTTGATACTGGAGATAAAGCCATTCAATGTGGACGGCACAATGATGTTTTCAAGCTTTGGTTGATGTGGAAGAGCAAGGGAATGGAGGGATATCGTCAGCAAATTAATAAGTTGATGGATTTGGCCAAC/t
Amino_acid_changeSVTWNPHKLMGALLQCSACLFRQDGLLFQCNQMSADYLFQQDKPYDVSFDTGDKAIQCGRHNDVFKLWLMWKSKGMEGYRQQINKLMDLAN/X
Y37D8A.23a.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScY37D8A.23a.1:c.938_1209del
HGVSpCE20226:p.Ser313LeufsTer7
cDNA_position948-1219
CDS_position938-1209
Protein_position313-403
Exon_number7/10
Codon_changetCAGTGACATGGAATCCACATAAGCTCATGGGAGCACTTCTCCAGTGCTCGGCATGCTTGTTCCGTCAGGATGGACTACTGTTCCAGTGTAATCAAATGTCGGCTGATTATCTATTCCAACAAGATAAACCGTACGATGTGAGCTTTGATACTGGAGATAAAGCCATTCAATGTGGACGGCACAATGATGTTTTCAAGCTTTGGTTGATGTGGAAGAGCAAGGGAATGGAGGGATATCGTCAGCAAATTAATAAGTTGATGGATTTGGCCAAC/t
Amino_acid_changeSVTWNPHKLMGALLQCSACLFRQDGLLFQCNQMSADYLFQQDKPYDVSFDTGDKAIQCGRHNDVFKLWLMWKSKGMEGYRQQINKLMDLAN/X
IsolationMutagenTMP/UV
GeneticsMapIII
DescriptionPhenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as homozygous viable by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Remark131270/131271-131542/131543 (272 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele