WormBase Tree Display for Variation: WBVar00251377

WBVar00251377 Name: Public_name: tm2503
    Other_name: CE01774:p.Leu58ArgfsTer31
      C09F5.2b.1:c.173_659del
      C09F5.2a.1:c.300-185_671del
      C09F5.2a.2:c.300-185_671del
    HGVSg: CHROMOSOME_III:g.653069_653697del
  Sequence_details: SMap: S_parent: Sequence: C09F5
    Flanking_sequences: taactccttatccgttacctcagtttttcc gttcacggcagtcggttatccaactgcagg
    Mapping_target: C09F5
    Source_location: 7 CHROMOSOME_III 653068 653698 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2503_external
      tm2503_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2503
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00015648
    Transcript: C09F5.2a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09F5.2a.2:c.300-185_671del
        cDNA_position: ?-898
        CDS_position: ?-671
        Protein_position: ?-224
        Intron_number: 4-5/7
        Exon_number: 5-6/8
      C09F5.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C09F5.2a.1:c.300-185_671del
        cDNA_position: ?-1169
        CDS_position: ?-671
        Protein_position: ?-224
        Intron_number: 6-7/9
        Exon_number: 7-8/10
      C09F5.2b.1 (11)
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Oringally classified as lethal OR sterile by the National Bioresource Project of Japan. Comments to the NBP from Dr. Hongkyun Kim: not Let. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: HKK
  Remark: 2183/2184-2812/2813 (629 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele