WormBase Tree Display for Variation: WBVar00251337

WBVar00251337 Name: Public_name: tm2452
    Other_name: Y38F2AL.2.1:c.89-92_230del
    HGVSg: CHROMOSOME_IV:g.2305817_2306095del
  Sequence_details: SMap: S_parent: Sequence: Y38F2AL
    Flanking_sequences: ccgtagttgtcatggtgccagatttggagc tcgaaaatttaaatttcccgccgaccgcat
    Mapping_target: Y38F2AL
    Source_location: 7 CHROMOSOME_IV 2305816 2306096 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2452_external
      tm2452_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Component_of_genotype: WBGenotype00000024
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2452
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00021416
    Transcript: Y38F2AL.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y38F2AL.2.1:c.89-92_230del
        cDNA_position: ?-237
        CDS_position: ?-230
        Protein_position: ?-77
        Intron_number: 2-3/5
        Exon_number: 3-4/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0002535 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. K. Oegema: non-Dyf. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: OD
  Disease_info: Models_disease: DOID:0050777
    Models_disease_in_annotation: WBDOannot00001195
  Remark: 13286/13287-13565/13566 (279 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele