WormBase Tree Display for Variation: WBVar00251062

WBVar00251062 Name: Public_name: tm2123
    HGVSg
  Sequence_details: SMap: S_parent: Sequence: Y80D3A
    Flanking_sequences: aatcgcaccttctcgcctccccgcctacct gttctccgattctcagctttacgcgttgag
    Mapping_target: Y80D3A
    Source_location: 7 CHROMOSOME_V 18874050 18875661 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TNCCGGTTCTAGTA
      Deletion
    PCR_product: tm2123_external
      tm2123_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00026699
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2123
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00013583
      WBGene00001258
    Transcript: Y80D3A.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-458
        CDS_position: ?-458
        Protein_position: ?-153
        Intron_number: 1/2
        Exon_number: 1-2/3
      Y80D3A.2a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        Intron_number: 13/20
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype (11)
    Phenotype_not_observed: WBPhenotype:0001646 Paper_evidence: WBPaper00034727
        Curator_confirmed: WBPerson2021
        Remark: The number of pharyngeal cells in ceh-51 mutants was similar to that in wild type Paper_evidence: WBPaper00034727
            Curator_confirmed: WBPerson2021
        Penetrance: Complete: Paper_evidence: WBPaper00034727
              Curator_confirmed: WBPerson2021
        Recessive: Paper_evidence: WBPaper00034727
          Curator_confirmed: WBPerson2021
        Variation_effect: Null: Paper_evidence: WBPaper00034727
            Curator_confirmed: WBPerson2021
  Reference: WBPaper00034727
  Remark: 18370/18371-TNCCGGTTCTAGTA-19980/19981 (1610 bp deletion + 14 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele