WormBase Tree Display for Variation: WBVar00250970

WBVar00250970 Name: Public_name: tm2024
    Other_name: C11E4.1.1:c.218-94_668delinsTTTTATGATTTCAATTCAGTCTATTTTTTCTTTAATATTCAACTCACTTTAAAAAAAAATCTGGTTCTAATTTTTTTTCAAAACAATTGTGGTTGATT
    HGVSg: CHROMOSOME_X:g.9585382_9586133delinsTTTTATGATTTCAATTCAGTCTATTTTTTCTTTAATATTCAACTCACTTTAAAAAAAAATCTGGTTCTAATTTTTTTTCAAAACAATTGTGGTTGATT
  Sequence_details: SMap: S_parent: Sequence: C11E4
    Flanking_sequences: tttcccaaaacaattctaccgatggaacat ttaattggttattaactaattgacaatcat
    Mapping_target: C11E4
    Source_location: 7 CHROMOSOME_X 9585381 9586134 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TTTTATGATTTCAATTCAGTCTATTTTTTCTTTAATATTCAACTCACTTTAAAAAAAAATCTGGTTCTAATTTTTTTTCAAAACAATTGTGGTTGATT
      Deletion
    PCR_product: tm2024_external
      tm2024_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2024
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00007516
    Transcript: C11E4.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C11E4.1.1:c.218-94_668delinsTTTTATGATTTCAATTCAGTCTATTTTTTCTTTAATATTCAACTCACTTTAAAAAAAAATCTGGTTCTAATTTTTTTTCAAAACAATTGTGGTTGATT
        cDNA_position: ?-695
        CDS_position: ?-668
        Protein_position: ?-223
        Intron_number: 4-5/6
        Exon_number: 5-6/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
  Remark: 1490/1491-TTTTATGATTTCAATTCAGTCTATTTTTTCTTTAATATTCAACTCACTTTAAAAAAAAATCTGGTTCTAATTTTTTTTCAAAACAATTGTGGTTGATT-2242/2243 (752 bp deletion + 98 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele