WormBase Tree Display for Variation: WBVar00250940

WBVar00250940 Name: Public_name: tm1980
    Other_name: Y69E1A.7c.1:c.14-967_159+19delinsT
    HGVSg: CHROMOSOME_IV:g.10962941_10964072delinsA
  Sequence_details: SMap: S_parent: Sequence: Y69E1A
    Flanking_sequences: agtacttgtgtcatagattatgctcatgaa aacacgatagatgtgacatcataaatgtgc
    Mapping_target: Y69E1A
    Source_location: 7 CHROMOSOME_IV 10962940 10964073 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: A
      Deletion
    PCR_product: tm1980_external
      tm1980_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1980
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000171
      WBGene00201914
    Transcript: Y69E1A.7b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/4
        Exon_number: 1/5
      Y69E1A.14 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      Y69E1A.7c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y69E1A.7c.1:c.14-967_159+19delinsT
        Intron_number: 2-3/7
        Exon_number: 3/8
      Y69E1A.7a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-2/6
        Exon_number: 1-2/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
    Mapping_data: In_multi_point: 5510
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Homozygous viable. Originally classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 19748/19749-A-20880/20881 (1132 bp deletion + 1 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele