WormBase Tree Display for Variation: WBVar00250837

WBVar00250837 Name: Public_name: tm1874
    Other_name: C34C6.5b.1:c.95-241_324+4del
      C34C6.5a.1:c.245-241_474+4del
      C34C6.5c.1:c.-147_237+4del
    HGVSg: CHROMOSOME_II:g.8700597_8701122del
  Sequence_details: SMap: S_parent: Sequence: C34C6
    Flanking_sequences: tttaaactaatttcgtgttttttgaaagcg acgagttgaacatttatacaattatttttc
    Mapping_target: C34C6
    Source_location: 7 CHROMOSOME_II 8700596 8701123 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1874_external
      tm1874_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1874
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00007918
    Transcript: C34C6.5d.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/4
        Exon_number: 1/5
      C34C6.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34C6.5c.1:c.-147_237+4del
        cDNA_position: 131-?
        Intron_number: 2-4/8
        Exon_number: 1-4/9
      C34C6.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34C6.5a.1:c.245-241_474+4del
        Intron_number: 2-4/8
        Exon_number: 3-4/9
      C34C6.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C34C6.5b.1:c.95-241_324+4del
        Intron_number: 1-3/6
        Exon_number: 2-3/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 28334/28335-28860/28861 (526 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele