WormBase Tree Display for Variation: WBVar00250621

WBVar00250621 Name: Public_name: tm1642
    HGVSg: CHROMOSOME_III:g.5697189_5697618del
  Sequence_details: SMap: S_parent: Sequence: B0336
    Flanking_sequences: ctgctcgaccggctcaatatccttttcata acatcgggatagcgtctgaaaatttgattt
    Mapping_target: B0336
    Source_location: 7 CHROMOSOME_III 5697188 5697619 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1642_external
      tm1642_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1642
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002982
      WBGene00015147
    Transcript: B0336.7b.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-105
        Exon_number: 1/7
      B0336.8.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 292-?
        CDS_position: 289-?
        Protein_position: 97-?
        Exon_number: 4-5/5
      B0336.7a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-129
        CDS_position: ?-111
        Protein_position: ?-37
        Intron_number: 2/7
        Exon_number: 1-3/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0001302 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. H. Zhang: accumulation of several germline P granule components in somatic cells. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: HZ
  Remark (2)
  Method: NBP_knockout_allele