WormBase Tree Display for Variation: WBVar00250255

WBVar00250255 Name: Public_name: tm1247
    Other_name: C05E11.1b.1:c.276_812+5del
      C05E11.1a.1:c.276_812+5del
    HGVSg: CHROMOSOME_X:g.4589092_4589928del
  Sequence_details: SMap: S_parent: Sequence: C05E11
    Flanking_sequences: tcttgctggtcgctacgtgattaacggatt tttctctcaaaagttccagaaatagttttg
    Mapping_target: C05E11
    Source_location: 7 CHROMOSOME_X 4589091 4589929 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1247_external
      tm1247_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1247
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00015492
    Transcript: C05E11.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C05E11.1a.1:c.276_812+5del
        cDNA_position: 276-?
        CDS_position: 276-?
        Protein_position: 92-?
        Intron_number: 2-5/6
        Exon_number: 2-5/7
      C05E11.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C05E11.1b.1:c.276_812+5del
        cDNA_position: 282-?
        CDS_position: 276-?
        Protein_position: 92-?
        Intron_number: 3-6/7
        Exon_number: 3-6/8
    Interactor: WBInteraction000503497
      WBInteraction000503498
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000478 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. I. Mori to the National Bioresource Project of Japan: weakly abnormal thermotaxis (raised at 23 C). Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 33516/33517-34353/34354 (837 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele