WormBase Tree Display for Gene: WBGene00015492
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| WBGene00015492 | SMap | S_parent | Sequence | C05E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lnp-1 | Person_evidence | WBPerson3411 | |||||
| Sequence_name | C05E11.1 | ||||||||
| Molecular_name | C05E11.1a | ||||||||
| C05E11.1a.1 | |||||||||
| CE29561 | |||||||||
| C05E11.1b | |||||||||
| CE52529 | |||||||||
| C05E11.1b.1 | |||||||||
| Other_name | CELE_C05E11.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | lnp-1 | ||||||||
| DB_info | Database | AceView | gene | XF209 | |||||
| WormQTL | gene | WBGene00015492 | |||||||
| WormFlux | gene | WBGene00015492 | |||||||
| NDB | locus_tag | CELE_C05E11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015492|UniProtKB=Q17667 | |||||||
| family | PTHR22166 | ||||||||
| NCBI | gene | 180731 | |||||||
| RefSeq | protein | NM_076387.7 | |||||||
| NM_001361798.3 | |||||||||
| SwissProt | UniProtAcc | Q17667 | |||||||
| TrEMBL | UniProtAcc | A0A2K5AU06 | |||||||
| UniProt_GCRP | UniProtAcc | Q17667 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 02 Feb 2007 10:20:45 | WBPerson2970 | Name_change | CGC_name | lnp-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lnp | ||||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Ortholog (33) | |||||||||
| Structured_description | Concise_description | lnp-1 encodes a highly conserved protein of unknown function, orthologous to human LUNAPARK/KIAA1715 (OMIM:610236), that is required for normally short body length, normal locomotion, fat content, acetylcholine neurotransmission, localization of RAB-3 and SNB-1, and sensitivity to aldicarb; LNP-1 is expressed in muscles, hypodermal cells, and neurons; within neurons, LNP-1 is localized to cell bodies, neuritic processes and commissures, and requiring UNC-104 for localization outside of cell bodies; LNP-1 is likely to act presynaptically; LNP-1 contains two N-terminal predicted transmembrane sequences, and an atypical zinc finger domain (C2HC2). | Paper_evidence | WBPaper00005655 | |||||
| WBPaper00006395 | |||||||||
| WBPaper00031526 | |||||||||
| WBPaper00031551 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 02 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable metal ion binding activity. Involved in several processes, including regulation of egg-laying behavior; synapse assembly; and synaptic vesicle transport. Located in several cellular components, including neuron projection; neuronal cell body; and synaptic vesicle. Expressed in hypodermis; muscle cell; and neurons. Is an ortholog of human LNPK (lunapark, ER junction formation factor). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C05E11.1a | |||||||
| C05E11.1b | |||||||||
| Corresponding_transcript | C05E11.1a.1 | ||||||||
| C05E11.1b.1 | |||||||||
| Other_sequence | CJC10945_1 | ||||||||
| Oden_isotig08103 | |||||||||
| Tcir_isotig10568 | |||||||||
| Name_isotig02503 | |||||||||
| FC546545.1 | |||||||||
| ACC36012_1 | |||||||||
| Tcol_isotig14237 | |||||||||
| Associated_feature | WBsf235609 | ||||||||
| WBsf235610 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr7994 | ||||||||
| Expr7995 | |||||||||
| Expr7996 | |||||||||
| Expr7997 | |||||||||
| Expr1017810 | |||||||||
| Expr1036627 | |||||||||
| Expr1143854 | |||||||||
| Expr2013241 | |||||||||
| Expr2031472 | |||||||||
| Drives_construct | WBCnstr00013050 | ||||||||
| WBCnstr00013051 | |||||||||
| WBCnstr00028806 | |||||||||
| Construct_product | WBCnstr00013050 | ||||||||
| WBCnstr00028806 | |||||||||
| Antibody | WBAntibody00001377 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (141) | |||||||||
| SAGE_tag (11) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | X | Position | -7.21371 | Error | 0.004921 | |||
| Positive | Positive_clone | C05E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031526 | ||||||||
| WBPaper00033274 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
