WormBase Tree Display for Variation: WBVar00250099

WBVar00250099 Name: Public_name: tm1081
    HGVSg: CHROMOSOME_III:g.10334010_10334783delinsTTTT
  Sequence_details: SMap: S_parent: Sequence: T07C4
    Flanking_sequences: agtcgatggatcagaaattcgaggaatttt cggaattcgcttcttaggattcgatttggc
    Mapping_target: T07C4
    Source_location: 7 CHROMOSOME_III 10334009 10334784 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TTTT
      Deletion
    PCR_product: tm1081_external
      tm1081_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1081
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003225
      WBGene00011563
    Transcript: T07C4.7b.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-194
        CDS_position: ?-194
        Protein_position: ?-65
        Exon_number: 1/2
      T07C4.11a.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-9
        CDS_position: ?-9
        Protein_position: ?-3
        Exon_number: 1/6
      T07C4.7a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-396
        CDS_position: ?-395
        Protein_position: ?-132
        Intron_number: 2/4
        Exon_number: 1-3/5
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
  Remark: 9875/9876-TTTT-10649/10650 (774 bp deletion + 4 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele