WormBase Tree Display for Variation: WBVar00249526

WBVar00249526 Name: Public_name: tm483
    Other_name: T05G5.10a.1:c.102-191_523-8del
    HGVSg: CHROMOSOME_III:g.9745981_9746796del
  Sequence_details: SMap: S_parent: Sequence: T05G5
    Flanking_sequences: ccgcaggcagcaacgacttgaacctgaaaa agaaaatcaaatgcgcgaatttttttgaaa
    Mapping_target: T05G5
    Source_location: 7 CHROMOSOME_III 9745980 9746797 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm483_external
      tm483_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00022686
      WBStrain00022688
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 483
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002064
      WBGene00271656
    Transcript: T05G5.10a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T05G5.10a.1:c.102-191_523-8del
        Intron_number: 2-5/6
        Exon_number: 3-5/7
      T05G5.10b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-3/4
        Exon_number: 1-3/5
      T05G5.10c.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/1
        Exon_number: 1/2
      T05G5.17 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
    Interactor: WBInteraction000501509
      WBInteraction000501510
      WBInteraction000501511
      WBInteraction000541635
      WBInteraction000549813
      WBInteraction000549814
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
    Mapping_data: In_multi_point: 4435
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Comment to the NBP from Dr. Y. Iino: Mech. Dev. 121, 213-224 (2004). Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: JN
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Comment to the NBP from Dr. Y. Iino: Mech. Dev. 121, 213-224 (2004). Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: JN
  Reference: WBPaper00018717
  Remark: 17474/17475-18290/18291 (816 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele