WormBase Tree Display for Variation: WBVar00249394

WBVar00249394 Name: Public_name: tm346
    Other_name: B0432.5c.1:c.1229_1452+110del
      B0432.5b.1:c.1034_1257+110del
      B0432.5a.1:c.1244_1467+110del
      Y43H11AL.3a.2:c.-13+2816_-13+3204del
    HGVSg: CHROMOSOME_II:g.260360_260748del
  Sequence_details: SMap: S_parent: Sequence: B0432
    Flanking_sequences: GAAAGCTAAAAGCAATTGGTGCTGGGCTAC ATTTTAACCAAATTTCAACAAATTAGTCTG
    Mapping_target: B0432
    Type_of_mutation: Deletion
    PCR_product: tm346_external
      tm346_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 346
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004166
      WBGene00000296
    Transcript: Y43H11AL.3a.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y43H11AL.3a.2:c.-13+2816_-13+3204del
        Intron_number: 1/28
      B0432.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0432.5c.1:c.1229_1452+110del
        cDNA_position: 1313-?
        CDS_position: 1229-?
        Protein_position: 410-?
        Intron_number: 7-8/8
        Exon_number: 7-8/9
      B0432.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0432.5a.1:c.1244_1467+110del
        cDNA_position: 1244-?
        CDS_position: 1244-?
        Protein_position: 415-?
        Intron_number: 6-7/8
        Exon_number: 6-7/9
      B0432.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0432.5b.1:c.1034_1257+110del
        cDNA_position: 1950-?
        CDS_position: 1034-?
        Protein_position: 345-?
        Intron_number: 6-7/8
        Exon_number: 6-7/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
  Remark: 2999/3000-3388/3389 (389 bp deletion)
    This knockout was generated by the National BioResource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. PMID 23173093 Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele