WormBase Tree Display for Variation: WBVar00247140
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WBVar00247140 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247140 | |||
Other_name | snp_Y41D4B[3] | ||||
cewivar00201393 | |||||
Y41D4B.10b.1:c.216-105A>C | |||||
Y41D4B.10a.1:c.369-105A>C | |||||
HGVSg | CHROMOSOME_IV:g.1612350A>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y41D4B | |
Flanking_sequences | tagaattagagctgaaaatagctggattattgaaaaagttgcata | attggctgagttttggctgaagctctacctacctacctac | |||
Mapping_target | Y41D4B | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00001105 | |||
Transcript | Y41D4B.10a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y41D4B.10a.1:c.369-105A>C | ||||
Intron_number | 4/5 | ||||
Y41D4B.10b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y41D4B.10b.1:c.216-105A>C | ||||
Intron_number | 2/2 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9328 VarS=AC | ||||
Enzymes. Bristol-specific: [MluCI,Sse9I,TasI,TseCI,Tsp509I,TspEI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y41D4B.3 | |||||
[20040130 db] this Allele was previously named snp_Y41D4B.3 | |||||
[20090224 db] original Wicks name : Y41D4B:54898..55586@351 Psnp=0.9328 VarS=AC | |||||
[20090224 db] original Wicks id : yy49f11.s1@281,c,47 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |