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WormBase Tree Display for Variation: WBVar00247140

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Name Class

WBVar00247140EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247140
Other_namesnp_Y41D4B[3]
cewivar00201393
Y41D4B.10b.1:c.216-105A>C
Y41D4B.10a.1:c.369-105A>C
HGVSgCHROMOSOME_IV:g.1612350A>C
Sequence_detailsSMapS_parentSequenceY41D4B
Flanking_sequencestagaattagagctgaaaatagctggattattgaaaaagttgcataattggctgagttttggctgaagctctacctacctacctac
Mapping_targetY41D4B
Type_of_mutationSubstitutionAC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00001105
TranscriptY41D4B.10a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY41D4B.10a.1:c.369-105A>C
Intron_number4/5
Y41D4B.10b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY41D4B.10b.1:c.216-105A>C
Intron_number2/2
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9328 VarS=AC
Enzymes. Bristol-specific: [MluCI,Sse9I,TasI,TseCI,Tsp509I,TspEI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y41D4B.3
[20040130 db] this Allele was previously named snp_Y41D4B.3
[20090224 db] original Wicks name : Y41D4B:54898..55586@351 Psnp=0.9328 VarS=AC
[20090224 db] original Wicks id : yy49f11.s1@281,c,47
[20090224 db] Snip-SNP
MethodSNP_Wicks