WormBase Tree Display for Variation: WBVar00231289
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WBVar00231289 | Evidence | Paper_evidence | WBPaper00037807 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00231289 | ||||
Other_name | pas43065 | |||||
cewivar00098638 | ||||||
CE10548:p.Gln156His | ||||||
F45H10.4.1:c.468G>T | ||||||
HGVSg | CHROMOSOME_II:g.13495173C>A | |||||
Sequence_details | SMap | S_parent | Sequence | F45H10 | ||
Flanking_sequences | cgataaaatctgaaaagaaagcgattaaaaagtaaataaataaatgaccggtcgtcagttggtgcatttgcgcgtcacggtgtttgcacacaatgcatcacattttacgggcaatgtgcctatggtaattaatttatataaataaacatgattttatagttgaaagtcgggctttttagagtcaataaaagaataatttattgtgaaaataagcaaaaaagaaaaatgaataaatctacaaaatcacaagtcttgataagcattagaacggaatggatgtgctggttcgatcacaatatt | tgacgttcggtatccgaagttgtctgtacctcacgatagattacagtacatgggacagcgtagaaaattgtttgtacgatgaagaaaacctgaaattaacatatatattgcctaaaaatcccccttaaaacccaccccagcagcaatatatcccgcagaagtgccgaaaagcgaccgattcgcgaacgaaaacgaaagccagacggaaatcacggagaggaccgccaaaataaaggaatacacgagctccacgacattccacgcgatgcttccattcgaaatactctccatgagctcatc | ||||
Mapping_target | F45H10 | |||||
Type_of_mutation | Substitution | C | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00022850 | From_analysis | WGS_De_Bono | ||||
Million_mutation_project_reanalysis | ||||||
WBStrain00024204 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | ||||
Laboratory | AX | |||||
Person | WBPerson6900 | |||||
Analysis | WGS_Pasadena_Quinlan | |||||
WGS_De_Bono | ||||||
Million_mutation_project_reanalysis | ||||||
History | Acquires_merge | WBVar01317042 | ||||
Status | Live | |||||
Affects | Gene | WBGene00009741 | ||||
Transcript | F45H10.4.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
SIFT | 0.16 | tolerated | ||||
PolyPhen | 0.94 | possibly_damaging | ||||
HGVSc | F45H10.4.1:c.468G>T | |||||
HGVSp | CE10548:p.Gln156His | |||||
cDNA_position | 576 | |||||
CDS_position | 468 | |||||
Protein_position | 156 | |||||
Exon_number | 5/6 | |||||
Codon_change | caG/caT | |||||
Amino_acid_change | Q/H | |||||
Reference | WBPaper00037807 | |||||
Method | WGS_Pasadena_Quinlan |